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add timestamp to rpointer files #2757

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merged 32 commits into from
Dec 19, 2024
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9f07cf9
add timestamps to rpointer files
jedwards4b Sep 26, 2024
887ceb8
Merge tag 'ctsm5.3.0' into add_timestamp_to_rpointers
jedwards4b Sep 27, 2024
cddf7e7
Merge tag 'ctsm5.3.002' into add_timestamp_to_rpointers
jedwards4b Sep 30, 2024
718bd41
reverse initialization of alarm_stop and alarm_restart
jedwards4b Oct 17, 2024
45fb774
Merge branch 'master' into add_timestamp_to_rpointers
ekluzek Dec 4, 2024
ee5261a
This is my understanding of the submodules that need to be used with …
ekluzek Dec 5, 2024
277384b
Another cime submodule update regarding rpointer things
ekluzek Dec 5, 2024
66b680d
Fix a syntax error that nag caught
ekluzek Dec 6, 2024
9a96642
Update cmeps, cime, share submodules to fix some testing issues
ekluzek Dec 9, 2024
bd06342
Update cmeps, cime, share submodules to fix some testing issues
ekluzek Dec 9, 2024
35dcfb4
Change tagname for share tag
ekluzek Dec 10, 2024
f2f1039
Move usermods_dirs under a clm subdirectory due to a change in cime i…
ekluzek Dec 11, 2024
3341540
Add the clm directory when the usermods_Dirs directory is referenced
ekluzek Dec 11, 2024
ae9986f
More change of usermods dirs to be under the clm subdir
ekluzek Dec 11, 2024
6e5b1b8
Correct path to NEON/PLUMBER2 user_mods_dirs
ekluzek Dec 11, 2024
acd2266
More usermods_dir corrections
ekluzek Dec 11, 2024
bb6a896
Fix some tests with bad test lengths, they all should have been 765 days
ekluzek Dec 12, 2024
df1d73a
update cmeps to fix TESTCASE issue
jedwards4b Dec 13, 2024
df66636
Point to cmeps tag
ekluzek Dec 13, 2024
277f6a2
Update cime and cmeps
ekluzek Dec 16, 2024
20c3709
Add comments on arguments and add error checking for data being sent …
ekluzek Dec 16, 2024
14aad99
Merge branch 'add_timestamp_to_rpointers' of github.com:jedwards4b/CT…
ekluzek Dec 16, 2024
f50e930
Update cdeps which solves the ERP issues on Izumi
ekluzek Dec 17, 2024
bd535c7
Run black
ekluzek Dec 17, 2024
f0bda7e
Add black reformat to git-blame-ignore
ekluzek Dec 17, 2024
73e44fd
Merge branch 'add_timestamp_to_rpointers' of github.com:jedwards4b/CT…
ekluzek Dec 17, 2024
d81356d
Merge ctsm5.3.015 in
ekluzek Dec 18, 2024
e2c1ae3
Update expected fails
ekluzek Dec 19, 2024
5880267
Start the change files
ekluzek Dec 19, 2024
8148ff3
Add expected fails for the mpi-serial tests since they are failing fo…
ekluzek Dec 19, 2024
48e5e16
Add SSP tests to expected fails
ekluzek Dec 19, 2024
b14d39d
Final Change files
ekluzek Dec 19, 2024
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1 change: 1 addition & 0 deletions .git-blame-ignore-revs
Original file line number Diff line number Diff line change
Expand Up @@ -52,3 +52,4 @@ aa04d1f7d86cc2503b98b7e2b2d84dbfff6c316b
045d90f1d80f713eb3ae0ac58f6c2352937f1eb0
753fda3ff0147837231a73c9c728dd9ce47b5997
f112ba0bbf96a61d5a4d354dc0dcbd8b0c68145c
bd535c710db78420b8e8b9d71d88d8339e899c59
6 changes: 3 additions & 3 deletions .gitmodules
Original file line number Diff line number Diff line change
Expand Up @@ -76,23 +76,23 @@ fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git
[submodule "cime"]
path = cime
url = https://github.com/ESMCI/cime
fxtag = cime6.1.37
fxtag = cime6.1.49
fxrequired = ToplevelRequired
# Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
fxDONOTUSEurl = https://github.com/ESMCI/cime

[submodule "cmeps"]
path = components/cmeps
url = https://github.com/ESCOMP/CMEPS.git
fxtag = cmeps1.0.16
fxtag = cmeps1.0.32
fxrequired = ToplevelRequired
# Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
fxDONOTUSEurl = https://github.com/ESCOMP/CMEPS.git

[submodule "cdeps"]
path = components/cdeps
url = https://github.com/ESCOMP/CDEPS.git
fxtag = cdeps1.0.57
fxtag = cdeps1.0.61
fxrequired = ToplevelRequired
# Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
fxDONOTUSEurl = https://github.com/ESCOMP/CDEPS.git
Expand Down
4 changes: 2 additions & 2 deletions README
Original file line number Diff line number Diff line change
Expand Up @@ -126,9 +126,9 @@ cime_config/config_tests.xml ----- Define CTSM specific tests
cime_config/config_pes.xml ------- Define Processor layouts for various CTSM grids and compsets
cime_config/testdefs ------------- Directory for specification of CTSM testing
cime_config/testdefs/ExpectedTestFails.xml -- List of tests that are expected to fail
cime_config/usermods_dirs -------- Directories of sets of user-modification subdirs
cime_config/usermods_dirs/clm ---- Directories of sets of user-modification subdirs
(These are directories that add specific user modifications to
simulations created using "cime/scripts/create_newcase --user-mods-dir".)
simulations created using "cime/scripts/create_newcase --user-mods-dir clm/*)

tools/mksurfdata_esmf --------- Directory to build program to create surface dataset
at any resolution.
Expand Down
4 changes: 2 additions & 2 deletions bld/unit_testers/build-namelist_test.pl
Original file line number Diff line number Diff line change
Expand Up @@ -368,7 +368,7 @@ sub cat_and_create_namelistinfile {
my $phys = "clm6_0";
$mode = "-phys $phys";
&make_config_cache($phys);
my $neondir = "../../cime_config/usermods_dirs/NEON";
my $neondir = "../../cime_config/usermods_dirs/clm/NEON";
foreach my $site ( "ABBY", "BLAN", "CPER", "DEJU", "GRSM", "HEAL", "KONA", "LENO", "NIWO",
"ONAQ", "PUUM", "SERC", "SRER", "TALL", "TREE", "WOOD", "BARR", "BONA",
"DCFS", "DELA", "GUAN", "JERC", "KONZ", "MLBS", "NOGP", "ORNL", "RMNP",
Expand Down Expand Up @@ -421,7 +421,7 @@ sub cat_and_create_namelistinfile {
my $phys = "clm6_0";
$mode = "-phys $phys";
&make_config_cache($phys);
my $plumdir = "../../cime_config/usermods_dirs/PLUMBER2";
my $plumdir = "../../cime_config/usermods_dirs/clm/PLUMBER2";
foreach my $site (
"AR-SLu", "AU-Emr", "AU-TTE", "CA-NS1", "CA-SF3", "CN-HaM", "DE-Obe", "ES-ES1", "FR-Gri", "IE-Dri", "IT-LMa", "IT-SRo", "RU-Fyo", "US-Aud", "US-Ho1", "US-Ne2", "US-Syv", "ZM-Mon",
"AT-Neu", "AU-Gin", "AU-Tum", "CA-NS2", "CH-Cha", "CN-Qia", "DE-Seh", "ES-ES2", "FR-Hes", "IT-Amp", "IT-Mal", "JP-SMF", "RU-Zot", "US-Bar", "US-KS2", "US-Ne3", "US-Ton",
Expand Down
18 changes: 9 additions & 9 deletions cime_config/config_component.xml
Original file line number Diff line number Diff line change
Expand Up @@ -355,15 +355,15 @@
<valid_values></valid_values>
<default_value></default_value>
<values match="last">
<value compset="_CLM60%[^_]*FATES-SP[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/fates_sp</value>
<value compset="_CLM50%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_deck</value>
<value grid="l%1.9x2.5" compset="_CLM50%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_nociso_deck</value>
<value compset="_CLM50%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_waccm_deck</value>
<value grid="l%1.9x2.5" compset="_CLM50%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_waccm_nociso_deck</value>
<value compset="_CLM60%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_deck</value>
<value grid="l%1.9x2.5" compset="_CLM60%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_nociso_deck</value>
<value compset="_CLM60%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_waccm_deck</value>
<value grid="l%1.9x2.5" compset="_CLM60%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_waccm_nociso_deck</value>
<value compset="_CLM60%[^_]*FATES-SP[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/clm/fates_sp</value>
<value compset="_CLM50%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/clm/cmip6_deck</value>
<value grid="l%1.9x2.5" compset="_CLM50%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/clm/cmip6_nociso_deck</value>
<value compset="_CLM50%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/clm/cmip6_waccm_deck</value>
<value grid="l%1.9x2.5" compset="_CLM50%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/clm/cmip6_waccm_nociso_deck</value>
<value compset="_CLM60%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/clm/cmip6_deck</value>
<value grid="l%1.9x2.5" compset="_CLM60%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/clm/cmip6_nociso_deck</value>
<value compset="_CLM60%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/clm/cmip6_waccm_deck</value>
<value grid="l%1.9x2.5" compset="_CLM60%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/clm/cmip6_waccm_nociso_deck</value>
</values>
<group>run_component_ctsm</group>
<file>env_case.xml</file>
Expand Down
240 changes: 235 additions & 5 deletions cime_config/testdefs/ExpectedTestFails.xml
Original file line number Diff line number Diff line change
Expand Up @@ -84,21 +84,21 @@
</phase>
</test>

<test name="ERP_P64x2_Lm13.f10_f10_mg37.IHistClm60Bgc.derecho_intel.clm-monthly--clm-matrixcnOn_ignore_warnings">
<test name="ERP_P64x2_Ld396.f10_f10_mg37.IHistClm60Bgc.derecho_intel.clm-monthly--clm-matrixcnOn_ignore_warnings">
<phase name="BASELINE">
<status>FAIL</status>
<issue>#2619</issue>
<comment>This failure relates to the following REP failure.</comment>
</phase>
</test>
<test name="REP_P64x2_Lm13.f10_f10_mg37.IHistClm60Bgc.derecho_intel.clm-monthly--clm-matrixcnOn_ignore_warnings">
<test name="REP_P64x2_Ld396.f10_f10_mg37.IHistClm60Bgc.derecho_intel.clm-monthly--clm-matrixcnOn_ignore_warnings">
<phase name="COMPARE_base_rep2">
<status>FAIL</status>
<issue>#2619</issue>
<comment>This failure relates to the preceding ERP failure.</comment>
</phase>
</test>
<test name="REP_P64x2_Lm13.f10_f10_mg37.IHistClm60Bgc.derecho_intel.clm-monthly--clm-matrixcnOn_ignore_warnings">
<test name="REP_P64x2_Ld396.f10_f10_mg37.IHistClm60Bgc.derecho_intel.clm-monthly--clm-matrixcnOn_ignore_warnings">
<phase name="BASELINE">
<status>FAIL</status>
<issue>#2619</issue>
Expand All @@ -114,7 +114,7 @@
</test>

<test name="SMS_D.f10_f10_mg37.I2000Clm60BgcCrop.derecho_nvhpc.clm-crop">
<phase name="RUN">
<phase name="BUILD">
<status>FAIL</status>
<issue>#1733</issue>
</phase>
Expand All @@ -127,6 +127,27 @@
</phase>
</test>

<test name="ERP_P64x2_Ld765.f10_f10_mg37.I2000Clm60BgcCrop.derecho_intel.clm-monthly">
<phase name="RUN">
<status>FAIL</status>
<issue>#2914</issue>
</phase>
</test>

<test name="ERS_P128x1_Ld765.f10_f10_mg37.I2000Clm60Fates.derecho_intel.clm-FatesColdNoComp">
<phase name="RUN">
<status>FAIL</status>
<issue>#2914</issue>
</phase>
</test>

<test name="LILACSMOKE_D_Ld2.f10_f10_mg37.I2000Ctsm50NwpSpAsRs.derecho_intel.clm-lilac">
<phase name="MODEL_BUILD">
<status>FAIL</status>
<issue>#2905</issue>
</phase>
</test>

<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Bgc.derecho_gnu.clm-NEON-MOAB--clm-PRISM">
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
Expand All @@ -144,7 +165,28 @@
<issue>#2913</issue>
</phase>
</test>


<test name="SSP_D_Ld10.f10_f10_mg37.I1850Clm60Bgc.derecho_intel.clm-rtmColdSSP">
<phase name="RUN">
<status>FAIL</status>
<issue>#2913</issue>
</phase>
</test>

<test name="SSP_D_Ld4.f10_f10_mg37.I1850Clm50BgcCrop.derecho_intel.clm-ciso_rtmColdSSP">
<phase name="RUN">
<status>FAIL</status>
<issue>#2913</issue>
</phase>
</test>

<test name="SSP_Ld10.f10_f10_mg37.I1850Clm50Bgc.derecho_gnu.clm-rtmColdSSP">
<phase name="RUN">
<status>FAIL</status>
<issue>#2913</issue>
</phase>
</test>

<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Bgc.izumi_nag.clm-default--clm-NEON-HARV--clm-matrixcnOn">
<phase name="RUN">
<status>FAIL</status>
Expand All @@ -163,6 +205,194 @@
</phase>
</test>


<!--- Izumi mpi-serial tests failing for me -->

<test name='ERS_D_Ld5_Mmpi-serial.1x1_vancouverCAN.I1PtClm50SpRs.izumi_nag.clm-CLM1PTStartDate' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_D_Ld7_Mmpi-serial.1x1_smallvilleIA.IHistClm50BgcCropRs.izumi_intel.clm-decStart1851_noinitial' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_D_Mmpi-serial_Ld5.1x1_brazil.I2000Clm50FatesRs.izumi_nag.clm-FatesCold' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ld1200_Mmpi-serial.1x1_numaIA.I2000Clm50BgcCropQianRs.izumi_gnu.clm-cropMonthlyNoinitial' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ld1600_Mmpi-serial.1x1_numaIA.I2000Clm50BgcCropQianRs.izumi_intel.clm-cropMonthlyNoinitial' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ld600_Mmpi-serial.1x1_smallvilleIA.I1850Clm50BgcCrop.izumi_gnu.clm-cropMonthlyNoinitial' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ly20_Mmpi-serial.1x1_numaIA.I2000Clm50BgcCropQianRs.izumi_intel.clm-cropMonthlyNoinitial' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ly20_Mmpi-serial.1x1_numaIA.I2000Clm50BgcCropQianRs.izumi_intel.clm-cropMonthlyNoinitial--clm-matrixcnOn' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ly3_Mmpi-serial.1x1_smallvilleIA.IHistClm50BgcCropQianRs.izumi_gnu.clm-cropMonthOutput' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ly5_Mmpi-serial.1x1_smallvilleIA.I1850Clm50BgcCrop.izumi_gnu.clm-ciso_monthly' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ly5_Mmpi-serial.1x1_smallvilleIA.I1850Clm50BgcCrop.izumi_gnu.clm-ciso_monthly--clm-matrixcnOn' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ly6_Mmpi-serial.1x1_smallvilleIA.IHistClm50BgcCropQianRs.izumi_intel.clm-cropMonthOutput' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='ERS_Ly6_Mmpi-serial.1x1_smallvilleIA.IHistClm50BgcCropQianRs.izumi_intel.clm-cropMonthOutput--clm-matrixcnOn_ignore_warnings' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_D_Ld1_Mmpi-serial.f45_f45_mg37.I2000Clm50SpRs.izumi_gnu.clm-ptsRLA' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_D_Ld1_Mmpi-serial.f45_f45_mg37.I2000Clm50SpRs.izumi_gnu.clm-ptsROA' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_D_Ld1_Mmpi-serial.f45_f45_mg37.I2000Clm50SpRs.izumi_nag.clm-ptsRLA' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_D_Ly6_Mmpi-serial.1x1_smallvilleIA.IHistClm45BgcCropQianRs.izumi_intel.clm-cropMonthOutput' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_D_Mmpi-serial_Ld5.5x5_amazon.I2000Clm60FatesRs.izumi_nag.clm-FatesCold' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60SpRs.izumi_nag.clm-default--clm-NEON-TOOL' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_Ld5_Mmpi-serial.1x1_brazil.IHistClm60Bgc.izumi_gnu.clm-mimics' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_Ly3_Mmpi-serial.1x1_numaIA.I2000Clm50BgcDvCropQianRs.izumi_gnu.clm-ignor_warn_cropMonthOutputColdStart' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_Ly5_Mmpi-serial.1x1_brazil.IHistClm50BgcQianRs.izumi_intel.clm-newton_krylov_spinup' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>


<test name='SMS_Ly5_Mmpi-serial.1x1_smallvilleIA.IHistClm60BgcCropQianRs.izumi_gnu.clm-gregorian_cropMonthOutput' >
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
<issue>#2916</issue>
</phase>
</test>

<!-- End of Izumi mpi-serial tests failing -->

<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Fates.derecho_gnu.clm-FatesPRISM--clm-NEON-FATES-YELL">
<phase name="SHAREDLIB_BUILD">
<status>FAIL</status>
Expand Down
4 changes: 2 additions & 2 deletions cime_config/testdefs/testlist_clm.xml
Original file line number Diff line number Diff line change
Expand Up @@ -1524,7 +1524,7 @@
<option name="wallclock">00:20:00</option>
</options>
</test>
<test name="ERP_P64x2_Ld762" grid="f10_f10_mg37" compset="I2000Clm60BgcCrop" testmods="clm/monthly">
<test name="ERP_P64x2_Ld765" grid="f10_f10_mg37" compset="I2000Clm60BgcCrop" testmods="clm/monthly">
<machines>
<machine name="derecho" compiler="intel" category="aux_clm"/>
</machines>
Expand Down Expand Up @@ -2412,7 +2412,7 @@
</options>
</test>

<test name="ERS_P128x1_Ld762" grid="f10_f10_mg37" compset="I2000Clm60Fates" testmods="clm/FatesColdNoComp">
<test name="ERS_P128x1_Ld765" grid="f10_f10_mg37" compset="I2000Clm60Fates" testmods="clm/FatesColdNoComp">
<machines>
<!-- no izumi tests since this has a pe layout specific for derecho -->
<machine name="derecho" compiler="intel" category="aux_clm"/>
Expand Down
Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@
../monthly
../../../../usermods_dirs/output_sp_exice
../../../../usermods_dirs/clm/output_sp_exice
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