fix: Fix Docker compatibility #15
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| name: Semantic Release | |
| on: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| release: | |
| runs-on: ubuntu-latest | |
| concurrency: release | |
| permissions: | |
| id-token: write | |
| contents: write | |
| outputs: | |
| released: ${{ steps.release.outputs.released }} | |
| version: ${{ steps.release.outputs.version }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Python Semantic Release | |
| id: release | |
| uses: python-semantic-release/python-semantic-release@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Publish package distributions to GitHub Releases | |
| uses: python-semantic-release/upload-to-gh-release@main | |
| if: steps.release.outputs.released == 'true' | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ steps.release.outputs.tag }} | |
| build-container: | |
| needs: release | |
| if: needs.release.outputs.released == 'true' | |
| runs-on: ubuntu-latest | |
| name: Build Singularity container | |
| steps: | |
| - name: Set up Go 1.16 | |
| uses: actions/setup-go@v1 | |
| with: | |
| go-version: 1.16 | |
| id: go | |
| - name: Install Singularity dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y \ | |
| build-essential \ | |
| libssl-dev \ | |
| uuid-dev \ | |
| libgpgme11-dev \ | |
| squashfs-tools \ | |
| libseccomp-dev \ | |
| pkg-config | |
| - name: Install Singularity | |
| env: | |
| SINGULARITY_VERSION: 3.9.0 | |
| GOPATH: /tmp/go | |
| run: | | |
| mkdir -p $GOPATH | |
| sudo mkdir -p /usr/local/var/singularity/mnt && \ | |
| mkdir -p $GOPATH/src/github.com/sylabs && \ | |
| cd $GOPATH/src/github.com/sylabs && \ | |
| wget -qO- https://github.com/sylabs/singularity/releases/download/v${SINGULARITY_VERSION}/singularity-ce-${SINGULARITY_VERSION}.tar.gz | \ | |
| tar xzv && \ | |
| cd singularity-ce-${SINGULARITY_VERSION} && \ | |
| ./mconfig -p /usr/local && \ | |
| make -C builddir && \ | |
| sudo make -C builddir install | |
| - name: Check out code for the container build | |
| uses: actions/checkout@v2 | |
| - name: Setup oras | |
| uses: oras-project/setup-oras@v1 | |
| - name: Login to GitHub package registry | |
| run: | | |
| echo ${{ secrets.GITHUB_TOKEN }} | oras login -u ${{ github.actor }} --password-stdin ghcr.io | |
| - name: Build and deploy Singularity container | |
| run: | | |
| recipe=singularity.def | |
| basename=oncoliner | |
| tag=${{ needs.release.outputs.version }} | |
| # Check if container exists | |
| base64token=$(echo ${{ secrets.GITHUB_TOKEN }} | base64) | |
| echo "Checking if container $basename:$tag already exists" | |
| if curl -s -H "Authorization: Bearer $base64token" https://ghcr.io/v2/${{ github.repository_owner }}/${basename}/tags/list | grep $tag; then | |
| echo "Container $basename:$tag already exists, skipping build" | |
| continue | |
| fi | |
| # Build container | |
| sudo -E singularity build $basename.sif $recipe | |
| # Push container and name by tag | |
| url="ghcr.io/${{ github.repository_owner }}/${basename}:${tag}" | |
| # Set to lower case | |
| url=$(echo $url | tr '[:upper:]' '[:lower:]') | |
| echo "Pushing container to $url" | |
| oras push $url --config /dev/null:application/vnd.unknown.config.v1+json $basename.sif:application/vnd.sylabs.sif.layer.v1.sif | |
| # Push container to latest tag | |
| url="ghcr.io/${{ github.repository_owner }}/${basename}:latest" | |
| # Set to lower case | |
| url=$(echo $url | tr '[:upper:]' '[:lower:]') | |
| echo "Pushing container to $url" | |
| oras push $url --config /dev/null:application/vnd.unknown.config.v1+json $basename.sif:application/vnd.sylabs.sif.layer.v1.sif | |
| rm $basename.sif |