fix: Fix mate_id referenced before assignment

EUCANCan · Apr 6, 2022 · 5efdeca · 5efdeca
1 parent 4f25669
commit 5efdeca
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/src/variant_extractor/VariantExtractor.py b/src/variant_extractor/VariantExtractor.py
@@ -187,6 +187,8 @@ def __handle_uncertain_sv(self):
                     mate_id = vcf_record.info['MATEID']
                 elif 'PARID' in vcf_record.info:
                     mate_id = vcf_record.info['PARID']
+                else:
+                    continue
                 mate_id = mate_id[0] if type(mate_id) != str else mate_id
                 pairs[mate_id] = (vcf_record, alt_name, sv_name)