COVID-19 split

[claireh93]

Split codebase so that all COVID-19 specific code is instead housed in https://github.com/ScottishCovidResponse/COVID19.jl

[coveralls]

Pull Request Test Coverage Report for Build 3713760066

• 94 of 107 (87.85%) changed or added relevant lines in 10 files are covered.
• 15 unchanged lines in 1 file lost coverage.
• Overall coverage decreased (-0.3%) to 71.98%

---

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
src/Transitions/TransitionLookup.jl	17	18	94.44%
src/Epidemiology/EpiGenerate.jl	27	29	93.1%
src/Epidemiology/EpiLandscape.jl	5	7	71.43%
src/Epidemiology/EpiList.jl	14	18	77.78%
src/Transitions/TransitionSystemHelperFuns.jl	0	4	0.0%

Files with Coverage Reduction	New Missed Lines	%
src/Epidemiology/shrink.jl	15	34.62%

Totals
Change from base Build 3713734163:	-0.3%
Covered Lines:	2389
Relevant Lines:	3319

---

💛 - Coveralls

[codecov]

Codecov Report

Base: 80.18% // Head: 79.96% // Decreases project coverage by -0.22% ⚠️

Coverage data is based on head (bbd7aca) compared to base (c6771a2).
Patch coverage: 87.85% of modified lines in pull request are covered.

Additional details and impacted files

@@            Coverage Diff             @@
##              dev      #84      +/-   ##
==========================================
- Coverage   80.18%   79.96%   -0.23%     
==========================================
  Files          44       43       -1     
  Lines        2781     2715      -66     
==========================================
- Hits         2230     2171      -59     
+ Misses        551      544       -7     

Impacted Files	Coverage Δ
src/EcoSISTEM.jl	66.66% <ø> (ø)
src/Epidemiology/EpiEnv.jl	85.71% <ø> (-5.47%)	⬇️
src/Transitions/Run.jl	86.32% <ø> (+0.61%)	⬆️
src/Transitions/TransitionSystemHelperFuns.jl	80.51% <0.00%> (ø)
src/Epidemiology/EpiLandscape.jl	75.00% <71.42%> (ø)
src/Epidemiology/EpiList.jl	78.26% <77.77%> (ø)
src/Epidemiology/EpiGenerate.jl	86.11% <93.10%> (ø)
src/Transitions/TransitionLookup.jl	98.36% <94.44%> (ø)
src/Epidemiology/EpiMove.jl	100.00% <100.00%> (ø)
src/Epidemiology/Inference.jl	100.00% <100.00%> (ø)
... and 4 more

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