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@pchaumeil pchaumeil released this 14 Feb 00:33
· 108 commits to master since this release
2.2.0
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2.2.0

Minor changes:

  • (#433) Added additional checks to ensure that the --outgroup_taxon cannot be set to a domain (root, de_novo_wf).
  • (#459/ #462 ) Fix deprecated np.bool in prodigal_biolib.py. Special thanks to @neoformit for his contribution.
  • (#466 ) RED value has been rounded to 5 decimals after the comma.
  • (#451 ) Extra checks have been added when Prodigal fails.
  • (#448) Warning has been added when all the genomes are filtered out and not classified.

Bug Fixes:

  • (#420 ) Fixed an issue where GTDB-Tk might hang when classifying TIGRFAM markers (identify, classify_wf, de_novo_wf). Special thanks to @lfenske-93 and @sjaenick for their contribution.
  • (#428) Fixed an issue where the --gtdbtk_classification_file would raise an error trying to read the classify summary (root, de_novo_wf).
  • (#439) Fix the pipeline when using protein files instead of nucleotide files. symlink uses absolute path instead.

Contributors

sjaenick, neoformit, and lfenske-93
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