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FABLE-3DXRD · Nov 5, 2024 · 223d754 · 223d754
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Showing 5 changed files with 17 additions and 2 deletions.
diff --git a/ImageD11/nbGui/TDXRD/0_3DXRD_segment_frelon.ipynb b/ImageD11/nbGui/TDXRD/0_3DXRD_segment_frelon.ipynb
@@ -378,6 +378,9 @@
     "    \"FeAu_0p5_tR\": []\n",
     "}\n",
     "\n",
+    "# USER: Change this prefix to match the naming convention of your datasets\n",
+    "# e.g if your slices are formatted like [\"ff_z0\", \"ff_z1\", \"ff_z2\"] etc, then the prefix could be \"ff\" or \"ff_z\"\n",
+    "\n",
     "dset_prefix = \"ff\"\n",
     "\n",
     "sample_list = [\"FeAu_0p5_tR\"]\n",

diff --git a/ImageD11/nbGui/TDXRD/2_3DXRD_index.ipynb b/ImageD11/nbGui/TDXRD/2_3DXRD_index.ipynb
@@ -679,6 +679,9 @@
     "    \"FeAu_0p5_tR\": []\n",
     "}\n",
     "\n",
+    "# USER: Change this prefix to match the naming convention of your datasets\n",
+    "# e.g if your slices are formatted like [\"ff_z0\", \"ff_z1\", \"ff_z2\"] etc, then the prefix could be \"ff\" or \"ff_z\"\n",
+    "\n",
     "dset_prefix = \"ff\"\n",
     "\n",
     "sample_list = [\"FeAu_0p5_tR\"]\n",

diff --git a/ImageD11/nbGui/TDXRD/2_3DXRD_index_friedel.ipynb b/ImageD11/nbGui/TDXRD/2_3DXRD_index_friedel.ipynb
@@ -795,6 +795,9 @@
     "    \"FeAu_0p5_tR\": []\n",
     "}\n",
     "\n",
+    "# USER: Change this prefix to match the naming convention of your datasets\n",
+    "# e.g if your slices are formatted like [\"ff_z0\", \"ff_z1\", \"ff_z2\"] etc, then the prefix could be \"ff\" or \"ff_z\"\n",
+    "\n",
     "dset_prefix = \"ff\"\n",
     "\n",
     "sample_list = [\"FeAu_0p5_tR\"]\n",

diff --git a/ImageD11/nbGui/TDXRD/2_3DXRD_index_grid.ipynb b/ImageD11/nbGui/TDXRD/2_3DXRD_index_grid.ipynb
@@ -912,6 +912,9 @@
     "    \"FeAu_0p5_tR\": []\n",
     "}\n",
     "\n",
+    "# USER: Change this prefix to match the naming convention of your datasets\n",
+    "# e.g if your slices are formatted like [\"ff_z0\", \"ff_z1\", \"ff_z2\"] etc, then the prefix could be \"ff\" or \"ff_z\"\n",
+    "\n",
     "dset_prefix = \"ff\"\n",
     "\n",
     "sample_list = [\"FeAu_0p5_tR\"]\n",

diff --git a/ImageD11/nbGui/TDXRD/4_3DXRD_merge_slices.ipynb b/ImageD11/nbGui/TDXRD/4_3DXRD_merge_slices.ipynb
@@ -87,12 +87,15 @@
     "# USER: pick a sample you want to import\n",
     "\n",
     "skips_dict = {\n",
-    "    \"FeAu_0p5_tR\": []\n",
+    "    ds.sample: []\n",
     "}\n",
     "\n",
+    "# USER: Change this prefix to match the naming convention of your datasets\n",
+    "# e.g if your slices are formatted like [\"ff_z0\", \"ff_z1\", \"ff_z2\"] etc, then the prefix could be \"ff\" or \"ff_z\"\n",
+    "\n",
     "dset_prefix = \"ff\"\n",
     "\n",
-    "sample_list = [\"FeAu_0p5_tR\"]\n",
+    "sample_list = [ds.sample]\n",
     "\n",
     "samples_dict = utils.find_datasets_to_process(rawdata_path, skips_dict, dset_prefix, sample_list)\n",
     "\n",