Remove hardcoded example dataset paths from notebooks

FABLE-3DXRD · Nov 5, 2024 · 53e1359 · 53e1359
1 parent 4ecc833
commit 53e1359
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Showing 6 changed files with 19 additions and 7 deletions.
diff --git a/ImageD11/nbGui/TDXRD/1_3DXRD_refine_parameters.ipynb b/ImageD11/nbGui/TDXRD/1_3DXRD_refine_parameters.ipynb
@@ -72,8 +72,10 @@
    "outputs": [],
    "source": [
     "# desination of H5 files\n",
+    "# replace below with e.g.:\n",
+    "# dset_path = '/data/visitor/expt1234/20240101/PROCESSED_DATA/sample/dataset/sample_dataset.h5'\n",
     "\n",
-    "dset_path = '/data/visitor/ihma439/id11/20231211/PROCESSED_DATA/James/20240909/FeAu_0p5_tR/FeAu_0p5_tR_ff1/FeAu_0p5_tR_ff1_dataset.h5'"
+    "dset_path = ''"
    ]
   },
   {

diff --git a/ImageD11/nbGui/TDXRD/2_3DXRD_index.ipynb b/ImageD11/nbGui/TDXRD/2_3DXRD_index.ipynb
@@ -68,8 +68,10 @@
    "outputs": [],
    "source": [
     "# desination of H5 files\n",
+    "# replace below with e.g.:\n",
+    "# dset_path = '/data/visitor/expt1234/20240101/PROCESSED_DATA/sample/dataset/sample_dataset.h5'\n",
     "\n",
-    "dset_path = '/data/visitor/ihma439/id11/20231211/PROCESSED_DATA/James/20240909/FeAu_0p5_tR/FeAu_0p5_tR_ff1/FeAu_0p5_tR_ff1_dataset.h5'"
+    "dset_path = ''"
    ]
   },
   {

diff --git a/ImageD11/nbGui/TDXRD/2_3DXRD_index_friedel.ipynb b/ImageD11/nbGui/TDXRD/2_3DXRD_index_friedel.ipynb
@@ -71,8 +71,10 @@
    "outputs": [],
    "source": [
     "# desination of H5 files\n",
+    "# replace below with e.g.:\n",
+    "# dset_path = '/data/visitor/expt1234/20240101/PROCESSED_DATA/sample/dataset/sample_dataset.h5'\n",
     "\n",
-    "dset_path = '/data/visitor/ihma439/id11/20231211/PROCESSED_DATA/James/20240909/FeAu_0p5_tR/FeAu_0p5_tR_ff1/FeAu_0p5_tR_ff1_dataset.h5'"
+    "dset_path = ''"
    ]
   },
   {

diff --git a/ImageD11/nbGui/TDXRD/2_3DXRD_index_grid.ipynb b/ImageD11/nbGui/TDXRD/2_3DXRD_index_grid.ipynb
@@ -55,8 +55,10 @@
    "outputs": [],
    "source": [
     "# desination of H5 files\n",
+    "# replace below with e.g.:\n",
+    "# dset_path = '/data/visitor/expt1234/20240101/PROCESSED_DATA/sample/dataset/sample_dataset.h5'\n",
     "\n",
-    "dset_path = '/data/visitor/ihma439/id11/20231211/PROCESSED_DATA/James/20240909/FeAu_0p5_tR/FeAu_0p5_tR_ff1/FeAu_0p5_tR_ff1_dataset.h5'"
+    "dset_path = ''"
    ]
   },
   {

diff --git a/ImageD11/nbGui/TDXRD/3_3DXRD_look_at_peaks.ipynb b/ImageD11/nbGui/TDXRD/3_3DXRD_look_at_peaks.ipynb
@@ -59,8 +59,10 @@
    "outputs": [],
    "source": [
     "# desination of H5 files\n",
+    "# replace below with e.g.:\n",
+    "# dset_path = '/data/visitor/expt1234/20240101/PROCESSED_DATA/sample/dataset/sample_dataset.h5'\n",
     "\n",
-    "dset_path = '/data/visitor/ihma439/id11/20231211/PROCESSED_DATA/James/20240724/FeAu_0p5_tR/FeAu_0p5_tR_ff1/FeAu_0p5_tR_ff1_dataset.h5'"
+    "dset_path = ''"
    ]
   },
   {

diff --git a/ImageD11/nbGui/TDXRD/4_3DXRD_merge_slices.ipynb b/ImageD11/nbGui/TDXRD/4_3DXRD_merge_slices.ipynb
@@ -59,9 +59,11 @@
    },
    "outputs": [],
    "source": [
-    "# load one of the first datasets to get the paths\n",
+    "# desination of H5 files\n",
+    "# replace below with e.g.:\n",
+    "# dset_path = '/data/visitor/expt1234/20240101/PROCESSED_DATA/sample/dataset/sample_dataset.h5'\n",
     "\n",
-    "dset_path = '/data/visitor/ihma439/id11/20231211/PROCESSED_DATA/James/20240724/FeAu_0p5_tR/FeAu_0p5_tR_ff1/FeAu_0p5_tR_ff1_dataset.h5'\n",
+    "dset_path = ''\n",
     "\n",
     "# load the dataset from file\n",
     "\n",