Update README.md #380
Workflow file for this run
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| # This is a basic workflow to help you get started with Actions | |
| name: CI | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| linter: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.9] | |
| os: [ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Create virtual environment and Install project and run linter | |
| run: | | |
| make virtualenv | |
| source .venv/bin/activate | |
| make install | |
| pip install flake8 black mypy | |
| make lint | |
| tests_linux: | |
| needs: linter | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.9] | |
| os: [ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Create virtual environment and Install project and run tests | |
| run: | | |
| make virtualenv | |
| source .venv/bin/activate | |
| make install | |
| pip install flake8 black mypy | |
| pip install pytest pytest-cov coverage | |
| pip install pysam | |
| make test | |
| - name: "Upload coverage to Codecov" | |
| uses: codecov/codecov-action@v1 | |
| # with: | |
| # fail_ci_if_error: true | |
| # tests_mac: | |
| # needs: linter | |
| # strategy: | |
| # fail-fast: false | |
| # matrix: | |
| # python-version: [3.9] | |
| # os: [macos-latest] | |
| # runs-on: ${{ matrix.os }} | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # | |
| # - name: Create virtual environment and Install project and run tests | |
| # run: | | |
| # pip install -e .[test] | |
| # pip install -r requirements-test.txt | |
| # pip list | |
| # make test | |
| # | |
| # tests_win: | |
| # needs: linter | |
| # strategy: | |
| # fail-fast: false | |
| # matrix: | |
| # python-version: [3.9] | |
| # os: [windows-latest] | |
| # runs-on: ${{ matrix.os }} | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # | |
| # - name: Install project and run tests | |
| # run: | | |
| # pip install -e .[test] | |
| # pip install -r requirements-test.txt | |
| # pip list | |
| # pytest -s -vvvv -l --tb=long tests | |
| # |