Feature/3dvar generateb #136
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Exception could be improved. Currently bump generation gives segmentation fault error. I will fix both in the 3dvar_execute sub branch. |
danholdaway
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Feb 10, 2023
* Add shell for the new tasks (#133) * add shell for all the new tasaks * rename b clim task * update registry Co-authored-by: danholdaway <[email protected]> * Feature/3dvar generateb (#136) * fetch bump or execution with seg fault * Feature/3dvar standalone godas (#138) * Add the basis for running standalone 3DVar * add bclim to flow * changes in executable * 3dvar is executing now, seg fault is fixed * hofx fix * changes in eva * GODAS observations and golden period * SPECIAL case in executable and modifications for 3dvar EVA * changes in flow * changes in flow and codestyle fixes * trailing spaces Co-authored-by: danholdaway <[email protected]> * write logs in the executable tasks * update YAML files to ioda v3 * Feature/3dvar bump eva (#140) * Add the basis for running standalone 3DVar * add bclim to flow * changes in executable * 3dvar is executing now, seg fault is fixed * hofx fix * changes in eva * GODAS observations and golden period * SPECIAL case in executable and modifications for 3dvar EVA * changes in flow * changes in flow and codestyle fixes * trailing spaces * bump SABER update works * ioda_v3 changes * changes in eva * yaml fixes * yaml fixes --------- Co-authored-by: danholdaway <[email protected]> * refactor eva to allow plotting jedi log things * fixes to workflow files * add new task for generating static b by linking (#147) * add new task for generating static b by linking. * remove prints * correct py norms * yaml norms --------- Co-authored-by: danholdaway <[email protected]> * Feature/3dvar lowres (#151) * fixing workflow * linking changes * lowres works * hofx working * 3dvar workflow running * DA recommended changes --------- Co-authored-by: danholdaway <[email protected]> Co-authored-by: Doruk Ardağ <[email protected]>
CRWayman
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Mar 31, 2023
* Add the suite file and task shell for running a forecast of GEOS (#150) Co-authored-by: danholdaway <[email protected]> * Remove constraint from the build_jedi suite file (#153) * Add workflow and tasks for performing 3DVar (tested with SOCA) (#152) * Add shell for the new tasks (#133) * add shell for all the new tasaks * rename b clim task * update registry Co-authored-by: danholdaway <[email protected]> * Feature/3dvar generateb (#136) * fetch bump or execution with seg fault * Feature/3dvar standalone godas (#138) * Add the basis for running standalone 3DVar * add bclim to flow * changes in executable * 3dvar is executing now, seg fault is fixed * hofx fix * changes in eva * GODAS observations and golden period * SPECIAL case in executable and modifications for 3dvar EVA * changes in flow * changes in flow and codestyle fixes * trailing spaces Co-authored-by: danholdaway <[email protected]> * write logs in the executable tasks * update YAML files to ioda v3 * Feature/3dvar bump eva (#140) * Add the basis for running standalone 3DVar * add bclim to flow * changes in executable * 3dvar is executing now, seg fault is fixed * hofx fix * changes in eva * GODAS observations and golden period * SPECIAL case in executable and modifications for 3dvar EVA * changes in flow * changes in flow and codestyle fixes * trailing spaces * bump SABER update works * ioda_v3 changes * changes in eva * yaml fixes * yaml fixes --------- Co-authored-by: danholdaway <[email protected]> * refactor eva to allow plotting jedi log things * fixes to workflow files * add new task for generating static b by linking (#147) * add new task for generating static b by linking. * remove prints * correct py norms * yaml norms --------- Co-authored-by: danholdaway <[email protected]> * Feature/3dvar lowres (#151) * fixing workflow * linking changes * lowres works * hofx working * 3dvar workflow running * DA recommended changes --------- Co-authored-by: danholdaway <[email protected]> Co-authored-by: Doruk Ardağ <[email protected]> * Update discover_nightly.yml (#154) The SWELL Nightly Workflow will now run at 00Z of each day. * Use skylake or cascade lake for the default nodes (#155) Co-authored-by: danholdaway <[email protected]> * Use 3 hours for BuildJedi (#157) Co-authored-by: danholdaway <[email protected]> * Use skylab 3 modules on Discover to maintain compatibility with JEDI (#158) * Use skylab 3 modules on Discover to maintain compatibility with JEDI * skylab3 --------- Co-authored-by: danholdaway <[email protected]> * Add workflow for building GEOS and populate relevant tasks (#156) * add draft tasks for geos clone and build * clone and build working offline * also install * bug * pep8 * use rstrip to remove trailing slash --------- Co-authored-by: danholdaway <[email protected]> * Only use Cascade Lake nodes for the jobs so they can be synced to the nogin node fabric (#159) Co-authored-by: danholdaway <[email protected]> * Fix channels without bc YAML (#160) Co-authored-by: danholdaway <[email protected]> * Bump version of Eva to 1.3.4 (#161) Co-authored-by: danholdaway <[email protected]> * Fix anchors in observation YAML files (#164) Co-authored-by: danholdaway <[email protected]> --------- Co-authored-by: Dan Holdaway <[email protected]> Co-authored-by: danholdaway <[email protected]> Co-authored-by: Doruk Ardağ <[email protected]> Co-authored-by: jardizzo <[email protected]>
danholdaway
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Mar 31, 2023
* Finished refactoring of task list based config prep * Removing questionary from base * Fixing pycodestyle errors * Get YAML Fixes in feature/refactor (#165) * Add the suite file and task shell for running a forecast of GEOS (#150) Co-authored-by: danholdaway <[email protected]> * Remove constraint from the build_jedi suite file (#153) * Add workflow and tasks for performing 3DVar (tested with SOCA) (#152) * Add shell for the new tasks (#133) * add shell for all the new tasaks * rename b clim task * update registry Co-authored-by: danholdaway <[email protected]> * Feature/3dvar generateb (#136) * fetch bump or execution with seg fault * Feature/3dvar standalone godas (#138) * Add the basis for running standalone 3DVar * add bclim to flow * changes in executable * 3dvar is executing now, seg fault is fixed * hofx fix * changes in eva * GODAS observations and golden period * SPECIAL case in executable and modifications for 3dvar EVA * changes in flow * changes in flow and codestyle fixes * trailing spaces Co-authored-by: danholdaway <[email protected]> * write logs in the executable tasks * update YAML files to ioda v3 * Feature/3dvar bump eva (#140) * Add the basis for running standalone 3DVar * add bclim to flow * changes in executable * 3dvar is executing now, seg fault is fixed * hofx fix * changes in eva * GODAS observations and golden period * SPECIAL case in executable and modifications for 3dvar EVA * changes in flow * changes in flow and codestyle fixes * trailing spaces * bump SABER update works * ioda_v3 changes * changes in eva * yaml fixes * yaml fixes --------- Co-authored-by: danholdaway <[email protected]> * refactor eva to allow plotting jedi log things * fixes to workflow files * add new task for generating static b by linking (#147) * add new task for generating static b by linking. * remove prints * correct py norms * yaml norms --------- Co-authored-by: danholdaway <[email protected]> * Feature/3dvar lowres (#151) * fixing workflow * linking changes * lowres works * hofx working * 3dvar workflow running * DA recommended changes --------- Co-authored-by: danholdaway <[email protected]> Co-authored-by: Doruk Ardağ <[email protected]> * Update discover_nightly.yml (#154) The SWELL Nightly Workflow will now run at 00Z of each day. * Use skylake or cascade lake for the default nodes (#155) Co-authored-by: danholdaway <[email protected]> * Use 3 hours for BuildJedi (#157) Co-authored-by: danholdaway <[email protected]> * Use skylab 3 modules on Discover to maintain compatibility with JEDI (#158) * Use skylab 3 modules on Discover to maintain compatibility with JEDI * skylab3 --------- Co-authored-by: danholdaway <[email protected]> * Add workflow for building GEOS and populate relevant tasks (#156) * add draft tasks for geos clone and build * clone and build working offline * also install * bug * pep8 * use rstrip to remove trailing slash --------- Co-authored-by: danholdaway <[email protected]> * Only use Cascade Lake nodes for the jobs so they can be synced to the nogin node fabric (#159) Co-authored-by: danholdaway <[email protected]> * Fix channels without bc YAML (#160) Co-authored-by: danholdaway <[email protected]> * Bump version of Eva to 1.3.4 (#161) Co-authored-by: danholdaway <[email protected]> * Fix anchors in observation YAML files (#164) Co-authored-by: danholdaway <[email protected]> --------- Co-authored-by: Dan Holdaway <[email protected]> Co-authored-by: danholdaway <[email protected]> Co-authored-by: Doruk Ardağ <[email protected]> Co-authored-by: jardizzo <[email protected]> * Removed white space for code styling --------- Co-authored-by: Dan Holdaway <[email protected]> Co-authored-by: danholdaway <[email protected]> Co-authored-by: Doruk Ardağ <[email protected]> Co-authored-by: jardizzo <[email protected]>
CRWayman
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May 4, 2023
* Finished refactoring of task list based config prep * Removing questionary from base * Fixing pycodestyle errors * Get YAML Fixes in feature/refactor (#165) * Add the suite file and task shell for running a forecast of GEOS (#150) Co-authored-by: danholdaway <[email protected]> * Remove constraint from the build_jedi suite file (#153) * Add workflow and tasks for performing 3DVar (tested with SOCA) (#152) * Add shell for the new tasks (#133) * add shell for all the new tasaks * rename b clim task * update registry Co-authored-by: danholdaway <[email protected]> * Feature/3dvar generateb (#136) * fetch bump or execution with seg fault * Feature/3dvar standalone godas (#138) * Add the basis for running standalone 3DVar * add bclim to flow * changes in executable * 3dvar is executing now, seg fault is fixed * hofx fix * changes in eva * GODAS observations and golden period * SPECIAL case in executable and modifications for 3dvar EVA * changes in flow * changes in flow and codestyle fixes * trailing spaces Co-authored-by: danholdaway <[email protected]> * write logs in the executable tasks * update YAML files to ioda v3 * Feature/3dvar bump eva (#140) * Add the basis for running standalone 3DVar * add bclim to flow * changes in executable * 3dvar is executing now, seg fault is fixed * hofx fix * changes in eva * GODAS observations and golden period * SPECIAL case in executable and modifications for 3dvar EVA * changes in flow * changes in flow and codestyle fixes * trailing spaces * bump SABER update works * ioda_v3 changes * changes in eva * yaml fixes * yaml fixes --------- Co-authored-by: danholdaway <[email protected]> * refactor eva to allow plotting jedi log things * fixes to workflow files * add new task for generating static b by linking (#147) * add new task for generating static b by linking. * remove prints * correct py norms * yaml norms --------- Co-authored-by: danholdaway <[email protected]> * Feature/3dvar lowres (#151) * fixing workflow * linking changes * lowres works * hofx working * 3dvar workflow running * DA recommended changes --------- Co-authored-by: danholdaway <[email protected]> Co-authored-by: Doruk Ardağ <[email protected]> * Update discover_nightly.yml (#154) The SWELL Nightly Workflow will now run at 00Z of each day. * Use skylake or cascade lake for the default nodes (#155) Co-authored-by: danholdaway <[email protected]> * Use 3 hours for BuildJedi (#157) Co-authored-by: danholdaway <[email protected]> * Use skylab 3 modules on Discover to maintain compatibility with JEDI (#158) * Use skylab 3 modules on Discover to maintain compatibility with JEDI * skylab3 --------- Co-authored-by: danholdaway <[email protected]> * Add workflow for building GEOS and populate relevant tasks (#156) * add draft tasks for geos clone and build * clone and build working offline * also install * bug * pep8 * use rstrip to remove trailing slash --------- Co-authored-by: danholdaway <[email protected]> * Only use Cascade Lake nodes for the jobs so they can be synced to the nogin node fabric (#159) Co-authored-by: danholdaway <[email protected]> * Fix channels without bc YAML (#160) Co-authored-by: danholdaway <[email protected]> * Bump version of Eva to 1.3.4 (#161) Co-authored-by: danholdaway <[email protected]> * Fix anchors in observation YAML files (#164) Co-authored-by: danholdaway <[email protected]> --------- Co-authored-by: Dan Holdaway <[email protected]> Co-authored-by: danholdaway <[email protected]> Co-authored-by: Doruk Ardağ <[email protected]> Co-authored-by: jardizzo <[email protected]> * Removed white space for code styling * Fixed change choices bug * Removed erroneous print statement * Removed unecessary before_next function which should be in cli class * Removing commented suite option for click --------- Co-authored-by: Dan Holdaway <[email protected]> Co-authored-by: danholdaway <[email protected]> Co-authored-by: Doruk Ardağ <[email protected]> Co-authored-by: jardizzo <[email protected]>
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Introduces 'bump' background error model in the workflow.
Generates or obtains bump files depending on the number of processors requested in the suite file.