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Feature/questions to tasks callum#189

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danholdaway merged 176 commits intodevelopGEOS-ESM/swell:developfrom feature/questions_to_tasks-callumGEOS-ESM/swell:feature/questions_to_tasks-callumCopy head branch name to clipboardAug 14, 2023

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Commits on Mar 14, 2023

• add suite for obs filter tests

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• Merge branch 'develop' into feature/ufo_tests

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• add ncdiag tasks

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• converter working (no geovals)

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• Merge branch 'develop' into feature/ufo_tests

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• executable runs

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• sat bias correction conversion added

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• add aircraft yaml

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• move to R2D2 for getting the observations

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• convert to using GetObservations

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• Merge branch 'develop' into feature/ufo_tests

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• clean up hidden aspects of the config

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• add class to handle jedi file templating

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• stage tasks working

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• unify copyright date

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• pep8

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Commits on May 23, 2023

• add utility for setting the list of tasks for each question

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• add question prompts

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• write lists the way python does

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• make sure jedi_forecast model is used

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• more q clean up

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• remove jedi exe base class from questions

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• convert task names to CamelCase in the questions

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• modify config class to create variables and methods to get them

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• Update generate_b_climatology_by_linking.py

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• common config availability

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• eva obs fix

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• fix clean patterns

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• update question yaml generation for now not using config_get

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• initialize the task questions for components

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• init def dict atmos

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• use existing for platform

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• set the defaults

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Commits on Jun 1, 2023

• swell prepare config from feature/refactor

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• commit prep config python code for questionary from feature/refactor

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• Debugging build_jedi with new framework

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• fixes to get hofx and 3dvar running

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• coding norms

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• Merge branch 'develop' into feature/clean_up_config

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• copy task qustions to install dir

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• action job name

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• build jedi paths

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• Merge branch 'feature/questions_to_tasks' into feature/ufo_tests

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• make tasks complianct with new config and base delgations

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• Add questions to task_questions

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• Add questions to task_questions formatting

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• add question answers to model interface

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• Do not overwrite the dictionary in the source code

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• more checking

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• improve testing of dictionary creation

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• Use spack-stack 1.4 modules to maintain compatibility with JEDI

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• py coding norms

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• Merge branch 'develop' into feature/ss-1.4

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• unload crtm and update jedi_bundle

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• Removing unnecessary suite_questions yaml from suites_new

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• Merge branch 'develop' into feature/questions_to_tasks

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• Merge branch 'feature/questions_to_tasks' into feature/ufo_tests

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• Merge branch 'feature/ss-1.4' into feature/ufo_tests

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• Removing models as a cli option

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• Removing experiment id default since we are not using jinja

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• Updating prep config tool for use with new task_questions yaml

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• changing one type from string to string-drop-list

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Commits on Jun 14, 2023

• Merge branch 'develop' into feature/ufo_tests

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• unused variables

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• rename suite

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• Bug fix and remove print

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• add operator test capability

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• rename some things

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• temp comment out

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• YAML generation working

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• add geos adas suite

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• Tasks for geosadas running

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• dates

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• unused variables

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• standardise task_questions

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• update default dictionaries

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• config changes

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• Changing the input method flad back to m

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• Refactoring of task questions yaml introduced to prep config python codes

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• Adding 'ask_question' keys to yaml

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• Changed duration to iso-duration in some question types

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• Fixing pycodestyle issues

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• Merge branch 'develop' into feature/questions_to_tasks-callum

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• suites_new -> suites

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• repair some merge conflict errors

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• add basis for model based suite questions

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• Merge branch 'develop' into feature/questions_to_tasks-callum

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Commits on Jul 12, 2023

• GMI_GPM full configuration for IODA v3 and x0048. (#187)

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• update data paths

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• Merge branch 'develop' into feature/ufo_tests

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• all tasks running smoothly

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• rename workflows

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• coding norms

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• yaml norms

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• test suite

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• update target workflows

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• some renaming

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• action testing

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• action testing

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• bug fix in run_command print

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• flow bug

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• add alternative workflow that generates the geovals as well as obs

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• better requirements

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• add da run parameter

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• Refactoring to add model suite questions

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• ufo_testing runs in cylc

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• Fixing directory order

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• update hofx to be x0048

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• updating scatwind yaml (#194)

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• UFO Tests - Satwind (#193)

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• add some missing instruments

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• Merge branch 'develop' into feature/questions_to_tasks-callum

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• add gps and avhrr specific cases

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• Feature/jjin3/ufo tests x0048 micorwave (#197)

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• YAML files for CrIS-FSR(n20,npp), AIRS & SSMIS (#200)

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• clean up issues in ncdiag 2 ioda calling task

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• fix bug for single file outputs

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• Removing debug prints and adding comments to platform and suite_to_run output

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• Merge branch 'feature/questions_to_tasks-callum' of https://github.com/GEOS-ESM/swell into feature/questions_to_tasks-callum

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• updating YAML resource files for IASI (#202)

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• ozone working better

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• more updates towards trifecta

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• Merge branch 'feature/ufo_tests' into feature/questions_to_tasks-callum

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• residual merge issue

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• Feature/questions to tasks dan (#205)

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