Add sweave vignette

.gitignore

@@ -47,3 +47,10 @@ vignettes/*.R
 # R Environment Variables
 .Renviron 
 inst/doc
+# Sweave vignette outputs
+vignettes/*.bbl
+vignettes/*.log
+vignettes/*.pdf
+vignettes/*.gz
+vignettes/*.toc
+vignettes/*.tex

vignettes/Bioc.bib

@@ -0,0 +1,79 @@
+@article{Gentleman:2004,
+  author =	 {Gentleman, Robert C and Carey, Vincent J and Bates,
+                  Douglas M and Bolstad, Ben and Dettling, Marcel and
+                  Dudoit, Sandrine and Ellis, Byron and Gautier,
+                  Laurent and Ge, Yongchao and Gentry, Jeff and
+                  Hornik, Kurt and Hothorn, Torsten and Huber,
+                  Wolfgang and Iacus, Stefano and Irizarry, Rafael and
+                  Leisch, Friedrich and Li, Cheng and Maechler, Martin
+                  and Rossini, Anthony J and Sawitzki, Gunther and
+                  Smith, Colin and Smyth, Gordon and Tierney, Luke and
+                  Yang, Jean Y H and Zhang, Jianhua},
+  title =	 {{Bioconductor: open software development for
+                  computational biology and bioinformatics.}},
+  journal =	 {Genome Biology},
+  year =	 {2004},
+  volume =	 {5},
+  number =	 {10},
+  pages =	 {R80},
+  doi =		 {10.1186/gb-2004-5-10-r80},
+  pubmed =	 {15461798}
+}
+
+@Article{10.1371/journal.pcbi.1003118,
+  title = {Software for Computing and Annotating Genomic Ranges},
+  Author = {Michael Lawrence and Wolfgang Huber and Herv\'e Pag\`es
+                and Patrick Aboyoun and Marc Carlson and Robert
+                Gentleman and Martin Morgan and Vincent Carey},
+  year = 2013,
+  journal = {{PLoS} Computational Biology},
+  volume = 9,
+  issue = 8,
+  doi = {10.1371/journal.pcbi.1003118},
+}
+
+@Inbook{Leisch2002,
+  author="Friedrich Leisch",
+  editor="Wolfgang H{\"a}rdle and Bernd R{\"o}nz",
+  chapter="Sweave: Dynamic Generation of Statistical Reports Using Literate Data Analysis",
+  title="Compstat: Proceedings in Computational Statistics",
+  year="2002",
+  publisher="Physica-Verlag HD",
+  address="Heidelberg",
+  pages="575--580",
+  isbn="978-3-642-57489-4",
+  doi="10.1007/978-3-642-57489-4_89",
+  url="http://leisch.userweb.mwn.de/Sweave/"
+}
+
+@Book{Xie2015,
+  title = {Dynamic Documents with {R} and knitr},
+  author = {Yihui Xie},
+  publisher = {Chapman and Hall/CRC},
+  address = {Boca Raton, Florida},
+  year = {2015},
+  edition = {2nd},
+  note = {ISBN 978-1498716963},
+  url = {http://yihui.name/knitr/},
+}
+
+@InCollection{Xie2014,
+  booktitle = {Implementing Reproducible Computational Research},
+  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
+  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
+  author = {Yihui Xie},
+  publisher = {Chapman and Hall/CRC},
+  year = {2014},
+  note = {ISBN 978-1466561595},
+  url = {http://www.crcpress.com/product/isbn/9781466561595},
+}
+
+@Book{Xie2018,
+  title = {R Markdown: The Definitive Guide},
+  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
+  publisher = {Chapman and Hall/CRC},
+  address = {Boca Raton, Florida},
+  year = {2018},
+  note = {ISBN 9781138359338},
+  url = {https://bookdown.org/yihui/rmarkdown},
+}