seqkit 2.6.0

[BrewTestBot]

Created by brew bump

---

Created with brew bump-formula-pr.

release notes

### Changes

SeqKit v2.6.0 - 2023-11-09 

seqkit:

add the shortcut -X for the flag --infile-list.


seqkit common:

add a new flag -e/--check-embedded-seqs for detecting embedded sequences.
for matching by sequences: reduced the memory occupation and corrected numbers in the log. #416


seqkit stat:

add a new column AvgQual for average quality score. #411


seqkit split2:

fix the panic for invalid input.


seqkit subseq:

add a new flag -R/--region-coord for appending coordinates to sequence ID for -r/--region. #413


seqkit locate:

add a new flag -s/--max-len-to-show to show at most X characters for the search pattern or matched sequences.


seqkit seq:

change the nucleotide color theme. #412





Links



OS
Arch
File, 中国镜像
Download Count




Linux
32-bit
seqkit_linux_386.tar.gz, 
 中国镜像



Linux
64-bit
seqkit_linux_amd64.tar.gz, 
 中国镜像



Linux
arm64
seqkit_linux_arm64.tar.gz, 
 中国镜像



macOS
64-bit
seqkit_darwin_amd64.tar.gz, 
 中国镜像



macOS
arm64
seqkit_darwin_arm64.tar.gz, 
 中国镜像



Windows
32-bit
seqkit_windows_386.exe.tar.gz, 
 中国镜像



Windows
64-bit
seqkit_windows_amd64.exe.tar.gz, 
 中国镜像




Notes

please open an issuse to request binaries for other platforms.
run seqkit version to check update !!!
run seqkit genautocomplete to update shell autocompletion script !!!

Please cite: W Shen, S Le, Y Li*, F Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation.

PLOS ONE. doi:10.1371/journal.pone.0163962.

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