Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Feature Request/Idea: File type recognition - Add computational workflow file types #8759

Closed
abujeda opened this issue Jun 1, 2022 · 1 comment · Fixed by #8761
Closed

Feature Request/Idea: File type recognition - Add computational workflow file types #8759

abujeda opened this issue Jun 1, 2022 · 1 comment · Fixed by #8761
Labels
HDC Harvard Data Commons HDC: 2 Harvard Data Commons Obj. 2 NIH OTA: 1.3.1 3 | 1.3.1 | Support software metadata | 5 prdOwnThis is an item synched from the product planning... pm.GREI-d-1.3.1 NIH, yr1, aim3, task1: Support software metadata pm.GREI-d-1.3.2 NIH, yr1, aim3, task2: R & D phase biomedical workflows support
Milestone
5.12

Comments

@abujeda
Copy link
Contributor

abujeda commented Jun 1, 2022 •
edited
Loading

Overview of the Feature Request
Add new computational workflow file types based on file extensions. These file types are:

  • WDL - Workflow Description Language
  • CWL - Computational Workflow Language
  • Nextflow
  • R Notebook
  • Ruby
  • DAGMan

What kind of user is the feature intended for?
Curator, Depositor, Guest

What inspired the request?
As part of the Harvard Data Commons project there is a requirement to support computations workflows.
Some workflows files are not currently recognized by the system. We would like to add this to the system.

What existing behavior do you want changed?
None

Any brand new behavior do you want to add to Dataverse?
None

Any related open or closed issues to this feature request?
No that I am aware of
@abujeda abujeda changed the title Feature Request/Idea: File type recognition - Add new types based on extensions Feature Request/Idea: File type recognition - Add computational workflow file types Jun 1, 2022
@abujeda abujeda mentioned this issue Jun 1, 2022
Merged
@abujeda
Copy link
Contributor Author

abujeda commented Jun 1, 2022

PR Created: #8761

pdurbin added a commit to abujeda/dataverse that referenced this issue Jun 1, 2022
@pdurbin
add release note IQSS#8759
53648c0
pdurbin added a commit to abujeda/dataverse that referenced this issue Jun 1, 2022
@pdurbin
"are now detected" instead of "should now be" IQSS#8759
7366b19
abujeda pushed a commit to abujeda/dataverse that referenced this issue Jun 10, 2022
@pdurbin @abujeda
add release note IQSS#8759
c779bf7
abujeda pushed a commit to abujeda/dataverse that referenced this issue Jun 10, 2022
@pdurbin @abujeda
"are now detected" instead of "should now be" IQSS#8759
e9575af
@pdurbin pdurbin added this to the 5.12 milestone Jul 25, 2022
@scolapasta scolapasta added HDC Harvard Data Commons HDC: 2 Harvard Data Commons Obj. 2 labels Aug 1, 2022
@mreekie mreekie added the NIH OTA: 1.3.1 3 | 1.3.1 | Support software metadata | 5 prdOwnThis is an item synched from the product planning... label Dec 15, 2022
@sync-by-unito sync-by-unito bot mentioned this issue Mar 3, 2023
Closed
3 tasks
@mreekie mreekie added pm.GREI-d-1.3.1 NIH, yr1, aim3, task1: Support software metadata pm.GREI-d-1.3.2 NIH, yr1, aim3, task2: R & D phase biomedical workflows support labels Mar 20, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
HDC Harvard Data Commons HDC: 2 Harvard Data Commons Obj. 2 NIH OTA: 1.3.1 3 | 1.3.1 | Support software metadata | 5 prdOwnThis is an item synched from the product planning... pm.GREI-d-1.3.1 NIH, yr1, aim3, task1: Support software metadata pm.GREI-d-1.3.2 NIH, yr1, aim3, task2: R & D phase biomedical workflows support
Projects
None yet
Milestone
5.12
Development

Successfully merging a pull request may close this issue.

File Recognition - Added computational workflow file types abujeda/dataverse
4 participants
@pdurbin @scolapasta @abujeda @mreekie