M9 SDS and cMIS (model-related metadata exposed on the Portal)

[elisabettai]

Work with K-CORE (lead) and the other Cores on display of model-related meta-data on the Portal.
The presentation of model-related metadata shall be consistent with the metadata section for published data on the Portal.

This will likely involve:

• Adaptation of the SDS and cMIS (in collaboration with K-CORE and where needed the other COREs). For EI, EN.
• An extension of the export functionality on o²S²PARC to export o²S²PARC metadata specific to the computational modeling side into the metadata files stored in the SDS. For PC, ANE

Deliverable: All o²S²PARC functionality required to power the display of the above-mentioned metadata on the SPARC Portal. Contribution to the Portal-side implementation.
Deadline: Y6Q3

Wrike Y6-M1.3

Update on March 2023: In this wrike ticket we provided a temporary cMIS file to start testing how it will be displayed on the SPARC Portal

Quilmes

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1. Update TSR frontend #1138
   +0
   
2. Export the latest code_description_example_dataset_2023-08-28.xlsx
3. cMIS export: remove unnecessary files and update existing ones to latest SDS osparc-simcore#4216
   t:enhancement +1
   

Pastel de Nata

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1. cMIS export: disable exporting data (inputs/outputs/workspace) osparc-simcore#4213
   t:maintenance +1
   
2. ♻️ webserver: fixes mypy issues in exporter plugin osparc-simcore#4339
   a:webserver t:maintenance +2
   

Watermelon

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1. Re-enable feature and cleanup front-end @GitHK with some help from @odeimaiz
2. Enable osparc CLI functionality for exporting projects osparc-simcore#3183
   a:webserver t:enhancement +2
   

Sundae

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1. Adaptation of the SDS and cMIS (in collaboration with K-CORE and where needed the other COREs) @esraneufeld @elisabettai
2. Apply cMIS to an example dataset (will use this template) @elisabettai

[pcrespov]

Goal for sprint Mithril

We will start working on the extension of the export part of this issue:

• Review export plugin: review and update cMIS compatibility, isolate in a service (plugin approach like GC), review testing: @GitHK @elisabettai

[pcrespov]

Update for sprint Jelly Beans

• @pcrespov @elisabettai @GitHK we should consider this one because it is next deadline!
• We met on Apr. 20 @pcrespov, @GitHK, @elisabettai:
  • Just enable of export of metadata files (Excel,...), not study data (for the moment)
  • The exact format of the Excel should be provided when it's finalized -> it takes long to change this in code
  • @GitHK will re-enable the function on master and @elisabettai reviews

[GitHK]

Update on sprint Pastel de Nata

Done:

• ♻️ Refactor exporter functionality Part1/2 (⚠️ devops) osparc-simcore#4258

[esraneufeld]

@esraneufeld will provide the Excel sheet to @GitHK as soon as the OK from K-Core arrives

[elisabettai]

In the Q3 reporting, we promised to finalize this by end of July

[elisabettai]

Update for sprint Sundae

Done

• Updated the cMIS with an example use-case
• Got approval from K-Core on the cMIS format
• Send the cMIS to MAP-Core (Alan) who will shortly apply it to one of his models
• Started drafting a response for the Standardization Commitee

Todo

• Finalize the response
• Publish cMIS on the Portal before submitting the response? To discuss with EN.
• Get more examples of application of the cMIS from external users? NP? Max (our Vienna friend)? To discuss with EN.
• Update the export functionality in oSPARC
• Update the oSPARC frontend for the new formulation/format of the Ten Simple Rules

[elisabettai]

Update for sprint Baklava

Done

• Received the cMIS proposal filled in by an independent user (Alan from MAP-Core)
• Finalized the cMIS proposal and re-submitted to the Standardization Committee. See attached excel files.
  code_description_2023-08-28.xlsx
  code_description_example_dataset_2023-08-28.xlsx

Todo

• Update the oSPARC export to fill in those excel files plus the other files. See cMIS export: remove unnecessary files and update existing ones to latest SDS osparc-simcore#4216 @GitHK, @elisabettai
• Update the frontend for the new formatting of the TSRs (see excel under "done") @odeimaiz
• Show metadata on the Portal. Before next CCB on Sep 20th. See corresponding wrike issue: displaying C-MIS metadata on type=simulations @mguidon UPDATE: this is on hold for the moment