COMP: Replace Get/Set macro calls by the corresponding itkVirtual call

Only for those Get/Set member functions that actually have an override.

Modules/Core/Common/include/itkImageBase.h

@@ -176,7 +176,7 @@ class ITK_TEMPLATE_EXPORT ImageBase : public DataObject
    * coordinates of the image origin (pixel [0,0]).  It is stored internally
    * as SpacePrecisionType but may be set from float or double.
    * \sa GetOrigin() */
-  itkSetMacro(Origin, PointType);
+  itkVirtualSetMacro(Origin, PointType);
   virtual void
   SetOrigin(const double origin[VImageDimension]);
   virtual void
@@ -213,7 +213,7 @@ class ITK_TEMPLATE_EXPORT ImageBase : public DataObject
   /** Get the direction cosines of the image. The direction cosines
    * are vectors that point from one pixel to the next.
    * For ImageBase and Image, the default direction is identity. */
-  itkGetConstReferenceMacro(Direction, DirectionType);
+  itkVirtualGetConstReferenceMacro(Direction, DirectionType);
 
   /** Get the inverse direction cosines of the image.
    * These are calculated automatically in SetDirection, thus there
@@ -224,13 +224,13 @@ class ITK_TEMPLATE_EXPORT ImageBase : public DataObject
    * spacing is the geometric distance between image samples along
    * each dimension. The value returned is a Vector<double, VImageDimension>.
    * For ImageBase and Image, the default data spacing is unity. */
-  itkGetConstReferenceMacro(Spacing, SpacingType);
+  itkVirtualGetConstReferenceMacro(Spacing, SpacingType);
 
   /** Get the origin of the image. The origin is the geometric
    * coordinates of the index (0,0).  The value returned is a
    * Point<double, VImageDimension>. For ImageBase and Image, the
    * default origin is 0. */
-  itkGetConstReferenceMacro(Origin, PointType);
+  itkVirtualGetConstReferenceMacro(Origin, PointType);
 
   /** Allocate the image memory. The size of the image must
    * already be set, e.g. by calling SetRegions() or SetBufferedRegion().

Modules/Core/Common/include/itkImageSink.h

@@ -175,11 +175,11 @@ class ImageSink
 
   /** Set the number of pieces to divide the input.  The upstream pipeline
    * will be executed this many times. */
-  itkSetMacro(NumberOfStreamDivisions, unsigned int);
+  itkVirtualSetMacro(NumberOfStreamDivisions, unsigned int);
 
   /** Get the number of pieces to divide the input. The upstream pipeline
    * will be executed this many times. */
-  itkGetConstMacro(NumberOfStreamDivisions, unsigned int);
+  itkVirtualGetConstMacro(NumberOfStreamDivisions, unsigned int);
 
   /** Set/Get Helper class for dividing the input into regions for
    * streaming */

Modules/Core/Common/include/itkProcessObject.h

@@ -490,7 +490,7 @@ class ITKCommon_EXPORT ProcessObject : public Object
   itkBooleanMacro(ReleaseDataBeforeUpdateFlag);
 
   /** Get/Set the number of work units to create when executing. */
-  itkSetClampMacro(NumberOfWorkUnits, ThreadIdType, 1, ITK_MAX_THREADS);
+  itkVirtualSetClampMacro(NumberOfWorkUnits, ThreadIdType, 1, ITK_MAX_THREADS);
   itkGetConstReferenceMacro(NumberOfWorkUnits, ThreadIdType);
 
 #if !defined(ITK_LEGACY_REMOVE) || defined(ITKV4_COMPATIBILITY)

Modules/Core/FiniteDifference/include/itkFiniteDifferenceImageFilter.h

@@ -182,7 +182,7 @@ class ITK_TEMPLATE_EXPORT FiniteDifferenceImageFilter : public InPlaceImageFilte
   itkSetObjectMacro(DifferenceFunction, FiniteDifferenceFunctionType);
 
   /** Set/Get the number of iterations that the filter will run. */
-  itkSetMacro(NumberOfIterations, IdentifierType);
+  itkVirtualSetMacro(NumberOfIterations, IdentifierType);
   itkGetConstReferenceMacro(NumberOfIterations, IdentifierType);
 
   /** Use the image spacing information in calculations. Use this option if you
@@ -193,13 +193,13 @@ class ITK_TEMPLATE_EXPORT FiniteDifferenceImageFilter : public InPlaceImageFilte
 
   /** Set/Get the maximum error allowed in the solution.  This may not be
       defined for all solvers and its meaning may change with the application. */
-  itkSetMacro(MaximumRMSError, double);
+  itkVirtualSetMacro(MaximumRMSError, double);
   itkGetConstReferenceMacro(MaximumRMSError, double);
 
   /** Set/Get the root mean squared change of the previous iteration. May not
       be used by all solvers. */
   itkSetMacro(RMSChange, double);
-  itkGetConstReferenceMacro(RMSChange, double);
+  itkVirtualGetConstReferenceMacro(RMSChange, double);
 
   /** Require the filter to be manually reinitialized (by calling
       SetStateToUninitialized() */

Modules/Filtering/ImageCompare/include/itkSTAPLEImageFilter.h

@@ -204,7 +204,7 @@ class ITK_TEMPLATE_EXPORT STAPLEImageFilter : public ImageToImageFilter<TInputIm
   /** Set/Get the maximum number of iterations after which the STAPLE algorithm
    *  will be considered to have converged.  In general this SHOULD NOT be set and
    *  the algorithm should be allowed to converge on its own. */
-  itkSetMacro(MaximumIterations, unsigned int);
+  itkVirtualSetMacro(MaximumIterations, unsigned int);
   itkGetConstMacro(MaximumIterations, unsigned int);
 
   /** Scales the estimated prior probability that a pixel will be inside the

Modules/IO/ImageBase/include/itkImageIOBase.h

@@ -89,7 +89,7 @@ class ITKIOImageBase_EXPORT ImageIOBase : public LightProcessObject
   itkTypeMacro(ImageIOBase, Superclass);
 
   /** Set/Get the name of the file to be read. */
-  itkSetStringMacro(FileName);
+  itkVirtualSetStringMacro(FileName);
   itkGetStringMacro(FileName);
 
   /** Types for managing image size and image index components. */

Modules/Numerics/Optimizersv4/include/itkGradientDescentOptimizerBasev4.h

@@ -100,7 +100,7 @@ class ITK_TEMPLATE_EXPORT GradientDescentOptimizerBasev4Template
   itkGetConstReferenceMacro(Gradient, DerivativeType);
 
   /** Get stop condition enum */
-  itkGetConstReferenceMacro(StopCondition, StopConditionObjectToObjectOptimizerEnum);
+  itkVirtualGetConstReferenceMacro(StopCondition, StopConditionObjectToObjectOptimizerEnum);
 
   /** Start and run the optimization */
   void

Modules/Numerics/Optimizersv4/include/itkGradientDescentOptimizerv4.h

@@ -153,7 +153,7 @@ class ITK_TEMPLATE_EXPORT GradientDescentOptimizerv4Template
    *  tests. It is suggested to use 1e-6 for less stringent convergence
    *  checking.
    */
-  itkSetMacro(MinimumConvergenceValue, TInternalComputationValueType);
+  itkVirtualSetMacro(MinimumConvergenceValue, TInternalComputationValueType);
 
   /** Window size for the convergence checker.
    *  The convergence checker calculates convergence value by fitting to
@@ -163,12 +163,12 @@ class ITK_TEMPLATE_EXPORT GradientDescentOptimizerv4Template
    *  tests. It is suggested to use 10 for less stringent convergence
    *  checking.
    */
-  itkSetMacro(ConvergenceWindowSize, SizeValueType);
+  itkVirtualSetMacro(ConvergenceWindowSize, SizeValueType);
 
   /** Get current convergence value.
    *  WindowConvergenceMonitoringFunction always returns output convergence
    *  value in 'TInternalComputationValueType' precision. */
-  itkGetConstReferenceMacro(ConvergenceValue, TInternalComputationValueType);
+  itkVirtualGetConstReferenceMacro(ConvergenceValue, TInternalComputationValueType);
 
   /** Flag. Set to have the optimizer track and return the best
    *  best metric value and corresponding best parameters that were

Modules/Numerics/Optimizersv4/include/itkObjectToObjectMetric.h

@@ -191,13 +191,13 @@ class ITK_TEMPLATE_EXPORT ObjectToObjectMetric : public ObjectToObjectMetricBase
   UpdateTransformParameters(const DerivativeType & derivative, TParametersValueType factor) override;
 
   /** Connect the fixed transform. */
-  itkSetObjectMacro(FixedTransform, FixedTransformType);
+  itkVirtualSetObjectMacro(FixedTransform, FixedTransformType);
 
   /** Get a pointer to the fixed transform.  */
   itkGetModifiableObjectMacro(FixedTransform, FixedTransformType);
 
   /** Connect the moving transform. */
-  itkSetObjectMacro(MovingTransform, MovingTransformType);
+  itkVirtualSetObjectMacro(MovingTransform, MovingTransformType);
 
   /** Get a pointer to the moving transform.  */
   itkGetModifiableObjectMacro(MovingTransform, MovingTransformType);

Modules/Numerics/Optimizersv4/include/itkObjectToObjectMetricBase.h

@@ -120,11 +120,11 @@ class ITK_TEMPLATE_EXPORT ObjectToObjectMetricBaseTemplate
   using ObjectConstPointer = typename ObjectType::ConstPointer;
 
   /** Get/Set the Fixed Object.  */
-  itkSetConstObjectMacro(FixedObject, ObjectType);
+  itkVirtualSetConstObjectMacro(FixedObject, ObjectType);
   itkGetConstObjectMacro(FixedObject, ObjectType);
 
   /** Get/Set the Moving Object.  */
-  itkSetConstObjectMacro(MovingObject, ObjectType);
+  itkVirtualSetConstObjectMacro(MovingObject, ObjectType);
   itkGetConstObjectMacro(MovingObject, ObjectType);
 
   using GradientSourceEnum = itk::ObjectToObjectMetricBaseTemplateEnums::GradientSource;

Modules/Numerics/Optimizersv4/include/itkObjectToObjectOptimizerBase.h

@@ -151,7 +151,7 @@ class ITK_TEMPLATE_EXPORT ObjectToObjectOptimizerBaseTemplate : public Object
   using StopConditionDescriptionType = std::ostringstream;
 
   /** Accessors for Metric */
-  itkSetObjectMacro(Metric, MetricType);
+  itkVirtualSetObjectMacro(Metric, MetricType);
   itkGetModifiableObjectMacro(Metric, MetricType);
 
   /** Accessor for metric value. Returns the value
@@ -237,10 +237,10 @@ class ITK_TEMPLATE_EXPORT ObjectToObjectOptimizerBaseTemplate : public Object
   itkGetConstMacro(CurrentIteration, SizeValueType);
 
   /** Set the number of iterations. */
-  itkSetMacro(NumberOfIterations, SizeValueType);
+  itkVirtualSetMacro(NumberOfIterations, SizeValueType);
 
   /** Get the number of iterations. */
-  itkGetConstMacro(NumberOfIterations, SizeValueType);
+  itkVirtualGetConstMacro(NumberOfIterations, SizeValueType);
 
   /** Get a reference to the current position of the optimization.
    * This returns the parameters from the assigned metric, since the optimizer

Modules/Numerics/Statistics/include/itkSample.h

@@ -159,7 +159,7 @@ class Sample : public DataObject
   }
 
   /** Get method for the length of the measurement vector */
-  itkGetConstMacro(MeasurementVectorSize, MeasurementVectorSizeType);
+  itkVirtualGetConstMacro(MeasurementVectorSize, MeasurementVectorSizeType);
 
   /** Method to graft another sample */
   void

Modules/Numerics/Statistics/include/itkSubsamplerBase.h

@@ -90,7 +90,7 @@ class ITK_TEMPLATE_EXPORT SubsamplerBase : public Object
   /** Provide an interface to set the seed.
    *  The seed value will be used by subclasses where appropriate.
    */
-  itkSetMacro(Seed, SeedType);
+  itkVirtualSetMacro(Seed, SeedType);
   itkGetConstReferenceMacro(Seed, SeedType);
 
 

Modules/Registration/Common/include/itkImageToImageMetric.h

@@ -142,7 +142,7 @@ class ITK_TEMPLATE_EXPORT ImageToImageMetric : public SingleValuedCostFunction
   itkGetConstObjectMacro(MovingImage, MovingImageType);
 
   /** Connect the Transform. */
-  itkSetObjectMacro(Transform, TransformType);
+  itkVirtualSetObjectMacro(Transform, TransformType);
 
   /** Get a pointer to the Transform.  */
   itkGetModifiableObjectMacro(Transform, TransformType);

Modules/Registration/Common/include/itkImageToSpatialObjectMetric.h

@@ -129,7 +129,7 @@ class ITK_TEMPLATE_EXPORT ImageToSpatialObjectMetric : public SingleValuedCostFu
   itkGetConstObjectMacro(FixedImage, FixedImageType);
 
   /** Get/Set the MovingSpatialObject */
-  itkSetConstObjectMacro(MovingSpatialObject, MovingSpatialObjectType);
+  itkVirtualSetConstObjectMacro(MovingSpatialObject, MovingSpatialObjectType);
   itkGetConstObjectMacro(MovingSpatialObject, MovingSpatialObjectType);
 
   /** Connect the Interpolator. */

Modules/Registration/Common/include/itkTransformParametersAdaptorBase.h

@@ -80,7 +80,7 @@ class TransformParametersAdaptorBase : public Object
   SetTransform(TransformBaseType * _arg, void * priorityLower = nullptr) = 0;
 
   /** Set the fixed parameters */
-  itkSetMacro(RequiredFixedParameters, FixedParametersType);
+  itkVirtualSetMacro(RequiredFixedParameters, FixedParametersType);
 
   /** Get the fixed parameters */
   itkGetConstReferenceMacro(RequiredFixedParameters, FixedParametersType);

Modules/Segmentation/LabelVoting/include/itkVotingBinaryImageFilter.h

@@ -89,13 +89,13 @@ class ITK_TEMPLATE_EXPORT VotingBinaryImageFilter : public ImageToImageFilter<TI
 
   /** Birth threshold. Pixels that are OFF will turn ON when the number of
    * neighbors ON is larger than the value defined in this threshold. */
-  itkGetConstReferenceMacro(BirthThreshold, unsigned int);
-  itkSetMacro(BirthThreshold, unsigned int);
+  itkVirtualGetConstReferenceMacro(BirthThreshold, unsigned int);
+  itkVirtualSetMacro(BirthThreshold, unsigned int);
 
   /** Survival threshold. Pixels that are ON will turn OFF when the number of
    * neighbors ON is smaller than the value defined in this survival threshold. */
-  itkGetConstReferenceMacro(SurvivalThreshold, unsigned int);
-  itkSetMacro(SurvivalThreshold, unsigned int);
+  itkVirtualGetConstReferenceMacro(SurvivalThreshold, unsigned int);
+  itkVirtualSetMacro(SurvivalThreshold, unsigned int);
 
   /** VotingBinaryImageFilter needs a larger input requested region than
    * the output requested region.  As such, VotingBinaryImageFilter needs

Modules/Segmentation/LevelSets/include/itkSparseFieldLevelSetImageFilter.h

@@ -300,7 +300,7 @@ class ITK_TEMPLATE_EXPORT SparseFieldLevelSetImageFilter : public FiniteDifferen
   /** Set/Get the number of layers to use in the sparse field.  Argument is the
    *  number of layers on ONE side of the active layer, so the total layers in
    *   the sparse field is 2 * NumberOfLayers +1 */
-  itkSetMacro(NumberOfLayers, unsigned int);
+  itkVirtualSetMacro(NumberOfLayers, unsigned int);
   itkGetConstMacro(NumberOfLayers, unsigned int);
 
   /** Set/Get the value of the isosurface to use in the input image. */

Modules/Segmentation/MarkovRandomFieldsClassifiers/include/itkMRFImageFilter.h

@@ -249,13 +249,13 @@ class ITK_TEMPLATE_EXPORT MRFImageFilter : public ImageToImageFilter<TInputImage
   SetClassifier(typename ClassifierType::Pointer ptrToClassifier);
 
   /** Set/Get the number of classes. */
-  itkSetMacro(NumberOfClasses, unsigned int);
-  itkGetConstMacro(NumberOfClasses, unsigned int);
+  itkVirtualSetMacro(NumberOfClasses, unsigned int);
+  itkVirtualGetConstMacro(NumberOfClasses, unsigned int);
 
   /** Set/Get the number of iteration of the Iterated Conditional Mode
    * (ICM) algorithm. A default value is set at 50 iterations. */
-  itkSetMacro(MaximumNumberOfIterations, unsigned int);
-  itkGetConstMacro(MaximumNumberOfIterations, unsigned int);
+  itkVirtualSetMacro(MaximumNumberOfIterations, unsigned int);
+  itkVirtualGetConstMacro(MaximumNumberOfIterations, unsigned int);
 
   /** Set/Get the error tolerance level which is used as a threshold
    * to quit the iterations */

Modules/Video/Core/include/itkTemporalProcessObject.h

@@ -223,11 +223,11 @@ class ITKVideoCore_EXPORT TemporalProcessObject : public ProcessObject
   virtual TemporalRegion
   GenerateDefaultLargestPossibleTemporalRegion();
 
-  itkSetMacro(UnitInputNumberOfFrames, SizeValueType);
-  itkSetMacro(UnitOutputNumberOfFrames, SizeValueType);
-  itkSetMacro(FrameSkipPerOutput, OffsetValueType);
-  itkSetMacro(InputStencilCurrentFrameIndex, SizeValueType);
-  itkGetMacro(InputStencilCurrentFrameIndex, SizeValueType);
+  itkVirtualSetMacro(UnitInputNumberOfFrames, SizeValueType);
+  itkVirtualSetMacro(UnitOutputNumberOfFrames, SizeValueType);
+  itkVirtualSetMacro(FrameSkipPerOutput, OffsetValueType);
+  itkVirtualSetMacro(InputStencilCurrentFrameIndex, SizeValueType);
+  itkVirtualGetMacro(InputStencilCurrentFrameIndex, SizeValueType);
 
   /*-PROTECTED MEMBERS-------------------------------------------------------*/