Pcr mapping (#36)

* Adding mapping for PCR result

* correct issue with pcr

* correct issue with detecte and non-detecte

* Updates and fixes (#37)

* fix failing tests

* Version bump

Co-authored-by: mozzy11 <[email protected]>
Co-authored-by: Celestin Kemar <[email protected]>
Co-authored-by: Jean Daboul MAXY <[email protected]>
Co-authored-by: mozzy11 <[email protected]>

.github/workflows/ci.yml

@@ -6,10 +6,10 @@ name: CI
 on:
   # Triggers the workflow on push or pull request events but only for the master branch
   push:
-    branches: [ master ]
+    branches: [ main ]
   pull_request:
-    branches: [ master ]
-
+  release:
+    types: [ created ]
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
@@ -28,19 +28,36 @@ jobs:
       - name: Set up JDK 1.8
         uses: actions/setup-java@v1
         with:
-          java-version: 1.8
+          java-version: 8.0.232
+      - name: Set up Maven
+        uses: stCarolas/setup-maven@v4
+        with:
+          maven-version: 3.6.3
       - name: Cache Maven packages
         uses: actions/cache@v2
         with:
           path: ~/.m2
           key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
           restore-keys: ${{ runner.os }}-m2
+      - uses: s4u/[email protected]
+        with:
+          servers: |
+            [{
+                "id": "github-packages",
+                "username": "${{ secrets.RELEASE_USERNAME }}",
+                "password": "${{ secrets.RELEASE_TOKEN }}"
+            }]
+          properties: |
+            [
+              { "maven.wagon.http.ssl.insecure": "true" },
+              { "maven.wagon.http.ssl.allowall": "true" },
+              { "maven.wagon.http.ssl.ignore.validity.dates": "true"}
+            ]
+          githubServer: false
       - name: Build with Maven
-        run: mvn -B install
-
-      # Runs a single command using the runners shell
-      - name: Run a one-line script
-        run: echo It Ran!
-
-
-
+        run: mvn -P 'github-packages' -B install
+      - name: Publish package
+        run: mvn -P github-packages -DskipTests -Dfindbugs.skip=true -Dpmd.skip=true -Dcpd.skip=true -B deploy
+        env:
+          GITHUB_TOKEN: ${{ secrets.RELEASE_TOKEN }}
+        if: github.event_name == 'release' && github.event.action == 'created'

.gitignore

@@ -16,3 +16,5 @@ id_file
 
 # Mac OSX
 .DS_Store
+
+.flattened-pom.xml

README.md

@@ -1,6 +1,6 @@
 Lab Integration Module
 ==========================
-![CI](https://github.com/IsantePlus/openmrs-module-labintegration/workflows/CI/badge.svg?branch=master)
+[![CI](https://github.com/IsantePlus/openmrs-module-labintegration/actions/workflows/ci.yml/badge.svg)](https://github.com/IsantePlus/openmrs-module-labintegration/actions/workflows/ci.yml)
 
 Description
 -----------

api/pom.xml

@@ -4,7 +4,7 @@
     <parent>
         <groupId>org.openmrs.module</groupId>
         <artifactId>labintegration</artifactId>
-        <version>2.1.0-SNAPSHOT</version>
+        <version>${revision}</version>
     </parent>
 
     <artifactId>labintegration-api</artifactId>