run ruff on yml files

.coveragerc

@@ -1,2 +1,2 @@
 [run]
-concurrency = multiprocessing
+concurrency = multiprocessing

.github/workflows/codeql-analysis.yml

@@ -48,11 +48,11 @@ jobs:
         # If you wish to specify custom queries, you can do so here or in a config file.
         # By default, queries listed here will override any specified in a config file.
         # Prefix the list here with "+" to use these queries and those in the config file.
-        
+
         # Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
         # queries: security-extended,security-and-quality
 
-        
+
     # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
     - name: Autobuild
@@ -61,7 +61,7 @@ jobs:
     # ℹ️ Command-line programs to run using the OS shell.
     # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
 
-    #   If the Autobuild fails above, remove it and uncomment the following three lines. 
+    #   If the Autobuild fails above, remove it and uncomment the following three lines.
     #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
 
     # - run: |

.github/workflows/python-package.yml

@@ -10,8 +10,20 @@ on:
     branches: [ main ]
 
 jobs:
-  build:
+  lint:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.9"
+          cache: pip
+          cache-dependency-path: pyproject.toml
 
+      - uses: pre-commit/[email protected]
+
+  test:
     runs-on: ubuntu-latest
     strategy:
       fail-fast: false
@@ -31,12 +43,12 @@ jobs:
         python -m pip install flake8 pytest pytest-mock pytest-split pytest-cov pytestify
         python -m pip install types-setuptools
         pip install .[featurizer]
-    - name: Lint with flake8
-      run: |
-        # stop the build if there are Python syntax errors or undefined names
-        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
-        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+#    - name: Lint with flake8
+#      run: |
+#        # stop the build if there are Python syntax errors or undefined names
+#        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+#        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+#        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest and coverage
       # run this locally to update tests durations
       # pytest --cov=lobsterpy --cov-append --splits 1 --group 1 --durations-path ./tests/test_data/.pytest-split-durations --store-durations
@@ -49,7 +61,7 @@ jobs:
         path: .coverage
 
   coverage:
-      needs: build
+      needs: test
       runs-on: ubuntu-latest
       steps:
         - uses: actions/checkout@v3
@@ -68,3 +80,23 @@ jobs:
           run: |
             coverage combine coverage*/.coverage*
             coverage report --show-missing
+
+  docs:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+          cache: pip
+          cache-dependency-path: pyproject.toml
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install .[docs, featurizer]
+
+      - name: Build
+        run: sphinx-build docs/source docs_build