Added javadoc publication action file and preparations for v1.4 release;

.github/workflows/publish-javadoc.yml

@@ -0,0 +1,25 @@
+name: Deploy Javadoc
+
+#Note: The Javadoc-publisher action only commits to javadoc branch and triggers the GitHub pages update action if there
+# are changes in the JavaDoc, i.e. it ignores the Readme.md that is used as main landing page of the GitHub pages!
+# And these need to be merged into the javadoc branch.
+
+on:
+  release:
+    types: [published] #alternatives: released, published, created
+  #push:
+    #branches:
+      #- main
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Deploy JavaDoc 🚀
+        uses: MathieuSoysal/[email protected]
+        with:
+          GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
+          javadoc-branch: javadoc
+          java-version: 17
+          target-folder: javadoc/1.4
+          project: maven

CITATION.cff

@@ -1,6 +1,6 @@
 cff-version: 1.2.0
 title: Sugar Removal Utility (SRU)
-version: 1.3.2.0
+version: 1.4.0.0
 message: "If you use this software, please cite it as below and also cite the accompanying scientific publication referenced below."
 type: software
 authors:

SugarRemovalUtility CMD App/Usage instructions.txt

@@ -21,7 +21,7 @@ The output file and a log file will be created in the same directory as the inpu
 To run the application, execute the supplied executable JAR file from the command line, using 
 the 'java -jar' command (see example usages at the end of this document). 
 
-Java version 11 or higher needs to be installed on your machine.
+Java version 17 or higher needs to be installed on your machine.
 
 Also, multiple command line arguments/options are available (some optional, some required) when executing 
 the JAR file. These are (-[short name] --[long name] <argument>):

pom.xml

@@ -30,7 +30,7 @@
 
     <groupId>de.unijena.cheminf</groupId>
     <artifactId>sugarremovalutility</artifactId>
-    <version>1.3.2.1</version>
+    <version>1.4.0.0</version>
     <name>Sugar Removal Utility</name>
 
     <properties>

src/main/java/de/unijena/cheminf/deglycosylation/Main.java

@@ -38,7 +38,7 @@
 public class Main {
     /**
      * Instantiates the SugarRemovalUtilityCmdApplication class and calls its execute() method.
-     * This method also tests the Java version (must be version 11.0.5 or higher) and measures the time it takes to
+     * This method also tests the Java version (must be version 17.0.4 or higher) and measures the time it takes to
      * execute the application. The command-line arguments (args) are not parsed or tested here but passed on to the
      * SugarRemovalUtilityCmdApplication class constructor. Outputs are written to System.out and System.err if
      * anything goes wrong. Exceptions are not thrown. The system is exited if an error occurs or the application is

src/main/java/de/unijena/cheminf/deglycosylation/SugarRemovalUtilityCmdApplication.java

@@ -78,7 +78,7 @@ public class SugarRemovalUtilityCmdApplication {
     /**
      * Version string of this class to print out if -v --version is queried from the command-line.
      */
-    public static final String VERSION = "1.3.2.0";
+    public static final String VERSION = "1.4.0.0";
     //</editor-fold>
     //
     //<editor-fold desc="Private static final constants">