[pre-commit.ci] pre-commit autoupdate #984
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| name: Pytest | |
| on: | |
| workflow_dispatch: | |
| release: | |
| types: [created] | |
| pull_request: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| name: '${{ matrix.test }} on ${{ matrix.os }}, py${{ matrix.python-version }}' | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: False | |
| matrix: | |
| test: [full, partial, minimal] | |
| python-version: ['3.8', '3.9', '3.10'] | |
| os: [ubuntu-latest, ubuntu-20.04] | |
| exclude: | |
| - test: full | |
| python-version: '3.9' | |
| - test: full | |
| python-version: '3.10' | |
| # Disabled in #183, as there is some recurring synda - issue | |
| - test: full | |
| python-version: '3.8' | |
| - test: full | |
| os: ubuntu-20.04 | |
| - test: minimal | |
| os: ubuntu-latest | |
| defaults: | |
| run: | |
| # This is needed otherwise we can't activate the conda installation | |
| shell: bash -l {0} | |
| steps: | |
| - name: Setup python | |
| if: matrix.test == 'minimal' | |
| uses: actions/[email protected] | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: minimal install | |
| if: matrix.test == 'minimal' | |
| run: | |
| | | |
| pip install -r requirements.txt | |
| pip install ../optim_esm_tools | |
| python -c "import optim_esm_tools; optim_esm_tools.utils.print_versions()" | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| if: matrix.test != 'minimal' | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: 'synda' | |
| mamba-version: '*' | |
| # PARTIAL (speed up testing) | |
| - name: run partial install | |
| if: matrix.test == 'partial' | |
| run: | | |
| conda activate synda | |
| bash .github/scripts/install_env.sh "--no_synda" | |
| # ALL | |
| - name: run full install | |
| if: matrix.test == 'full' | |
| run: | | |
| conda activate synda | |
| bash .github/scripts/install_env.sh | |
| bash .github/scripts/install_tex.sh | |
| - name: set Synda config | |
| if: matrix.test == 'full' | |
| env: | |
| OPEN_ID: ${{ secrets.OPEN_ID }} | |
| OPEN_ID_KEY: ${{ secrets.OPEN_ID_KEY }} | |
| run: bash .github/scripts/write_synda_cridentials.sh | |
| - name: Download data with Synda | |
| if: matrix.test == 'full' | |
| run: bash .github/scripts/download_example_data.sh | |
| - name: Run the tests | |
| if: matrix.test != 'minimal' | |
| env: | |
| NUMBA_DISABLE_JIT: 1 | |
| _CACHE_TRUE: 1 | |
| run: | |
| | | |
| coverage run --source=optim_esm_tools -m pytest -v --durations 0 | |
| # coverage run --append --source=optim_esm_tools -m pytest --nbmake -n=auto ./notebooks | |
| coverage report | |
| - name: Upload coverage | |
| if: matrix.test != 'minimal' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: coveralls --service=github | |
| - name: goodbye | |
| run: echo goodbye |