Allow kw in clustering #1075
Workflow file for this run
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| name: Pytest | |
| on: | |
| workflow_dispatch: | |
| release: | |
| types: [created] | |
| pull_request: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| name: "${{ matrix.test }} on ${{ matrix.os }}, py${{ matrix.python-version }}" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: False | |
| matrix: | |
| test: [partial, minimal, notebook] | |
| python-version: ["3.8", "3.9", "3.10"] | |
| os: [ubuntu-latest, ubuntu-20.04] | |
| exclude: | |
| - test: notebook | |
| os: ubuntu-20.04 | |
| - test: minimal | |
| os: ubuntu-20.04 | |
| - test: partial | |
| os: ubuntu-latest | |
| - test: partial | |
| python-version: "3.8" | |
| - test: partial | |
| python-version: "3.9" | |
| defaults: | |
| run: | |
| # This is needed otherwise we can't activate the conda installation | |
| shell: bash -l {0} | |
| steps: | |
| - name: Setup python | |
| if: matrix.test == 'minimal' | |
| uses: actions/[email protected] | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: minimal install | |
| if: matrix.test == 'minimal' | |
| run: | | |
| pip install -r requirements.txt | |
| pip install ../optim_esm_tools | |
| python -c "import optim_esm_tools; optim_esm_tools.utils.print_versions()" | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| if: matrix.test != 'minimal' | |
| with: | |
| installer-url: https://github.com/conda-forge/miniforge/releases/download/24.9.2-0/Miniforge3-24.9.2-0-Linux-x86_64.sh | |
| allow-softlinks: true | |
| show-channel-urls: true | |
| use-only-tar-bz2: true | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: "synda" | |
| # PARTIAL (speed up testing) | |
| - name: run partial install | |
| if: matrix.test != 'minimal' | |
| run: | | |
| conda activate synda | |
| bash .github/scripts/install_env.sh "--no_synda" | |
| - name: Run the notebook | |
| if: matrix.test == 'notebook' | |
| env: | |
| NUMBA_DISABLE_JIT: 0 | |
| run: | | |
| pytest --cov optim_esm_tools -v --nbmake notebooks/*.ipynb --durations 0 --nb-coverage | |
| coverage run --append --source=optim_esm_tools -m pytest -v --durations 0 | |
| coverage report | |
| - name: Run the tests | |
| if: matrix.test == 'partial' | |
| env: | |
| NUMBA_DISABLE_JIT: 1 | |
| _CACHE_TRUE: 1 | |
| run: | | |
| coverage run --append --source=optim_esm_tools -m pytest -v --durations 0 | |
| coverage report | |
| - name: Upload coverage | |
| if: matrix.test != 'minimal' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: coveralls --service=github | |
| - name: goodbye | |
| run: echo goodbye |