Merge pull request #163 from lmh91/csg_updates

Refactor Volume Primitives and Improvements in Painting Thanks both of you for your comments!
JuliaPhysics · Jun 30, 2021 · ba44cc3 · ba44cc3
2 parents 3dafb40 + 325f0e8
commit ba44cc3
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Showing 91 changed files with 4,651 additions and 2,360 deletions.
diff --git a/Project.toml b/Project.toml
@@ -15,6 +15,9 @@ JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 ParallelProcessingTools = "8e8a01fc-6193-5ca1-a2f1-20776dae4199"
+Parameters = "d96e819e-fc66-5662-9728-84c9c7592b0a"
+PolygonOps = "647866c9-e3ac-4575-94e7-e3d426903924"
+Polynomials = "f27b6e38-b328-58d1-80ce-0feddd5e7a45"
 ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca"
 RadiationDetectorSignals = "bf2c0563-65cf-5db2-a620-ceb7de82658c"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
@@ -41,6 +44,7 @@ IntervalSets = "0.3, 0.4, 0.5"
 JSON = "0.21"
 LaTeXStrings = "1"
 ParallelProcessingTools = "0.4"
+PolygonOps = "0.1"
 ProgressMeter = "1.2"
 RadiationDetectorSignals = "0.1"
 RecipesBase = "0.7, 0.8, 1.0"

diff --git a/docs/make.jl b/docs/make.jl
@@ -16,12 +16,12 @@ function fix_literate_output(content)
     return content
 end
 
-gen_content_dir = joinpath(@__DIR__, "src")
-tutorial_src = joinpath(@__DIR__, "src", "tutorial_lit.jl")
-Literate.markdown(tutorial_src, gen_content_dir, name = "tutorial", documenter = true, credit = true, postprocess = fix_literate_output)
-#Literate.markdown(tutorial_src, gen_content_dir, name = "tutorial", codefence = "```@repl tutorial" => "```", documenter = true, credit = true)
-Literate.notebook(tutorial_src, gen_content_dir, execute = false, name = "ssd_tutorial", documenter = true, credit = true)
-Literate.script(tutorial_src, gen_content_dir, keep_comments = false, name = "ssd_tutorial", documenter = true, credit = false)
+# gen_content_dir = joinpath(@__DIR__, "src")
+# tutorial_src = joinpath(@__DIR__, "src", "tutorial_lit.jl")
+# Literate.markdown(tutorial_src, gen_content_dir, name = "tutorial", documenter = true, credit = true, postprocess = fix_literate_output)
+# #Literate.markdown(tutorial_src, gen_content_dir, name = "tutorial", codefence = "```@repl tutorial" => "```", documenter = true, credit = true)
+# Literate.notebook(tutorial_src, gen_content_dir, execute = false, name = "ssd_tutorial", documenter = true, credit = true)
+# Literate.script(tutorial_src, gen_content_dir, keep_comments = false, name = "ssd_tutorial", documenter = true, credit = false)
 
 
 makedocs(
@@ -44,7 +44,7 @@ makedocs(
             "Drift Fields" => "man/drift_fields.md",
             "IO" => "man/IO.md",
         ],
-        "Tutorial" => "tutorial.md",
+        # "Tutorial" => "tutorial.md",
         "API" => "api.md",
         "LICENSE" => "LICENSE.md",
     ],

diff --git a/examples/example_config_files/public_CGD_config.json b/examples/example_config_files/public_CGD_config.json
diff --git a/examples/example_config_files/public_CGD_config.yaml b/examples/example_config_files/public_CGD_config.yaml
@@ -0,0 +1,105 @@
+name: ExampleCuboid
+units:
+  length: mm
+  angle: deg
+  potential: V
+  temperature: K
+grid:
+  coordinates: cartesian
+  axes:
+    x:
+      from: -9
+      to: 9
+      boundaries: inf
+    y:
+      from: -9
+      to: 9
+      boundaries: inf
+    z:
+      from: -9
+      to: 9
+      boundaries: inf
+medium: vacuum
+detectors:
+  - translate: 
+      x: 0
+    rotate: 
+      Z: 45
+    bulk:
+      material: HPGe
+      temperature: 78
+      impurity_density:
+        name: linear
+        x:
+          init: 0
+          gradient: 0
+        y:
+          init: 0
+          gradient: 0
+        z:
+          init: 10000000
+          gradient: 50000
+      charge_drift_model:
+        include: ADLChargeDriftModel/drift_velocity_config.json
+      geometry:
+        box:
+          x: 10 # width in x
+          y: 10 # width in y
+          z: 10 # width in z
+    contacts:
+      - material: HPGe
+        name: n+ contact
+        potential: 2000
+        channel: 1
+        geometry:
+          union:
+            - box:
+                x: 
+                  from: -5
+                  to: -4.5
+                y: 10
+                z: 10
+            - translate:
+                z: 4.5
+                box:
+                  x: 
+                    from: -4.5
+                    to: -4
+                  y: 10
+                  z: 1
+      - material: HPGe
+        name: p+ contact
+        potential: 0
+        channel: 2
+        geometry:
+          translate:
+            y: 0
+            difference:
+              - box:
+                  x: 
+                    from: 4.5
+                    to: 5
+                  y: 10
+                  z: 10
+              - box:
+                  x: 
+                    from: 4 
+                    to: 5.5
+                  y: 4
+                  z: 4
+
+surroundings:
+  - name: Base
+    material: Copper
+    potential: 0
+    geometry:
+      box:
+        x:
+          from: -9
+          to: 9
+        y:
+          from: -9
+          to: 9
+        z:
+          from: -9
+          to: -7
diff --git a/examples/example_config_files/public_CGD_config_cyl_grid.yaml b/examples/example_config_files/public_CGD_config_cyl_grid.yaml
@@ -0,0 +1,104 @@
+name: ExampleCuboid
+units:
+  length: mm
+  angle: deg
+  potential: V
+  temperature: K
+grid:
+  coordinates: cylindrical
+  axes:
+    r:
+      to: 9
+      boundaries: inf
+    y:
+      from: 0
+      to: 0
+      boundaries: periodic
+    z:
+      from: -9
+      to: 9
+      boundaries: inf
+medium: vacuum
+detectors:
+  - translate: 
+      x: 0
+    rotate: 
+      Z: 45
+    bulk:
+      material: HPGe
+      temperature: 78
+      impurity_density:
+        name: linear
+        x:
+          init: 0
+          gradient: 0
+        y:
+          init: 0
+          gradient: 0
+        z:
+          init: 10000000
+          gradient: 50000
+      charge_drift_model:
+        include: ADLChargeDriftModel/drift_velocity_config.json
+      geometry:
+        box:
+          x: 10 # width in x
+          y: 10 # width in y
+          z: 10 # width in z
+    contacts:
+      - material: HPGe
+        name: n+ contact
+        potential: 2000
+        channel: 1
+        geometry:
+          union:
+            - box:
+                x: 
+                  from: -5
+                  to: -4.5
+                y: 10
+                z: 10
+            - translate:
+                z: 4.5
+                box:
+                  x: 
+                    from: -4.5
+                    to: -4
+                  y: 10
+                  z: 1
+      - material: HPGe
+        name: p+ contact
+        potential: 0
+        channel: 2
+        geometry:
+          translate:
+            y: 0
+            difference:
+              - box:
+                  x: 
+                    from: 4.5
+                    to: 5
+                  y: 10
+                  z: 10
+              - box:
+                  x: 
+                    from: 4 
+                    to: 5.5
+                  y: 4
+                  z: 4
+
+surroundings:
+  - name: Base
+    material: Copper
+    potential: 0
+    geometry:
+      box:
+        x:
+          from: -9
+          to: 9
+        y:
+          from: -9
+          to: 9
+        z:
+          from: -9
+          to: -7