85 need to update cmake files and cd environment (#87)

* Issue #85: removal of mention of cdash has server is not available anymore

* Issue #85: Adding a .ignore file

* Issue #86 (#85): removed matlab dependent tests. Added a new one with Catch2 as a dependency

* Issue #85 removing gitlab ci yaml file

* Issue #85: Adding initial github action yaml file

* Issue #85: Adding Catch2

* Issue #85: Adding macos and win

.github/workflows/build_and_test.yml

@@ -0,0 +1,106 @@
+name: build-and-test
+on: [push, pull_request]
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy: 
+      max-parallel: 3
+      matrix:
+        os: [ubuntu-20.04, macos-11, windows-2022]
+        include:
+          - os: ubuntu-20.04
+            c-compiler: "gcc"
+            cxx-compiler: "g++"
+            use_cuda: "OFF"
+            use_opencl: "OFF"
+            use_openmp: "ON"
+          - os: macos-11
+            c-compiler: "gcc"
+            cxx-compiler: "g++"
+            use_cuda: "OFF"
+            use_opencl: "OFF"
+            use_openmp: "OFF"
+          - os: windows-2022
+            c-compiler: "cl.exe"
+            cxx-compiler: "cl.exe"
+            use_cuda: "OFF"
+            use_opencl: "OFF"
+            use_openmp: "ON"
+            vcvars64: "C:/Program Files/Microsoft Visual Studio/2022/Enterprise/VC/Auxiliary/Build/vcvars64.bat"
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Get CMake
+        uses: lukka/get-cmake@latest
+
+      - name: Install Catch2
+        if: matrix.os != 'windows-2022'
+        run:  |
+          git clone https://github.com/catchorg/Catch2.git
+          cd Catch2
+          cmake -Bbuild -H. -DBUILD_TESTING=OFF
+          sudo cmake --build build/ --target install --config Release
+        shell: bash
+
+      - name: Install Catch2 (windows)
+        if: matrix.os == 'windows-2022'
+        run:  |
+          call "${{ matrix.vcvars64 }}"
+          git clone https://github.com/catchorg/Catch2.git
+          cd Catch2
+          cmake -Bbuild -H. -DBUILD_TESTING=OFF
+          cmake --build build/ --target install --config Release
+        shell: cmd
+
+      - name: Configure NiftyReg
+        if: matrix.os != 'windows-2022'
+        run: |
+          mkdir build
+          cd build
+          cmake -DCMAKE_CXX_COMPILER=${{ matrix.cxx-compiler }} \
+                -DCMAKE_C_COMPILER=${{ matrix.c-compiler }} \
+                -DCMAKE_BUILD_TYPE=Release \
+                -DBUILD_ALL_DEP=ON \
+                -DUSE_CUDA=${{ matrix.use_cuda }} \
+                -DUSE_OPENCL=${{ matrix.use_opencl }} \
+                -DUSE_SSE=ON \
+                -DUSE_OPENMP=${{ matrix.use_openmp }} \
+                -DBUILD_TESTING=ON \
+                ..
+        shell: bash
+
+      - name: Configure NiftyReg (windows)
+        if: matrix.os == 'windows-2022'
+        run: |
+          mkdir build
+          cd build
+          call "${{ matrix.vcvars64 }}"
+          cmake -DCMAKE_CXX_COMPILER=${{ matrix.cxx-compiler }} -DCMAKE_C_COMPILER=${{ matrix.c-compiler }} -DCMAKE_BUILD_TYPE=Release -DBUILD_ALL_DEP=ON -DUSE_CUDA=${{ matrix.use_cuda }} -DUSE_OPENCL=${{ matrix.use_opencl }} -DUSE_SSE=ON  -DUSE_OPENMP=${{ matrix.use_openmp }}  -DBUILD_TESTING=ON ..
+        shell: cmd
+
+      - name: Build NiftyReg
+        if: matrix.os != 'windows-2022'
+        run: cmake --build build --config Release
+        shell: bash
+
+      - name: Build NiftyReg (windows)
+        if: matrix.os == 'windows-2022'
+        run: |
+          call "${{ matrix.vcvars64 }}"
+          cmake --build build --config Release
+        shell: cmd
+
+      - name: Run tests
+        if: matrix.os != 'windows-2022'
+        run: ctest -V
+        working-directory: build
+        shell: bash
+
+      - name: Run tests (windows)
+        if: matrix.os == 'windows-2022'
+        run: |
+          call "${{ matrix.vcvars64 }}"
+          ctest -V
+        working-directory: build
+        shell: cmd
+

.gitignore

@@ -0,0 +1,41 @@
+# Prerequisites
+*.d
+
+# Compiled Object files
+*.slo
+*.lo
+*.o
+*.obj
+
+# Precompiled Headers
+*.gch
+*.pch
+
+# Compiled Dynamic libraries
+*.so
+*.dylib
+*.dll
+
+# Fortran module files
+*.mod
+*.smod
+
+# Compiled Static libraries
+*.lai
+*.la
+*.a
+*.lib
+
+# Executables
+*.exe
+*.out
+*.app
+
+# IDE
+.idea
+
+# Mac trash folder 
+.DS_Store
+
+# Build
+build