uses CI_PAT now #62
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| name: R-CMD-check | |
| on: | |
| push: | |
| branches: | |
| # - main | |
| # - dev | |
| - code-cov | |
| pull_request: | |
| branches: | |
| # - main | |
| # - dev | |
| - code-cov | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.3.3' | |
| - name: Install system dependencies | |
| run: sudo apt-get update && sudo apt-get install -y libcurl4-openssl-dev | |
| - name: Install R dependencies | |
| env: | |
| GITHUB_PAT: ${{ secrets.CI_PAT }} | |
| run: | | |
| Rscript -e "Sys.setenv(CI_PAT = Sys.getenv('CI_PAT'))" | |
| Rscript -e "options(warn = 2)" | |
| Rscript -e "install.packages(c('remotes', 'covr'))" | |
| Rscript -e "remotes::install_github('Katsevich-Lab/sceptredata')" | |
| Rscript -e "remotes::install_deps(dependencies=TRUE)" | |
| - name: Generate coverage report | |
| run: Rscript -e "covr::codecov(quiet = FALSE)" | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |