Merge pull request #6 from Knowledge-Graph-Hub/add-kg-microbe

Migrate kg microbe
Knowledge-Graph-Hub · Oct 26, 2023 · f47de90 · f47de90
2 parents d30e641 + fe8e08c
commit f47de90
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Showing 44 changed files with 425,674 additions and 283,168 deletions.
diff --git a/.gitignore b/.gitignore
@@ -127,13 +127,16 @@ dmypy.json
 
 # Pyre type checker
 .pyre/
-data/raw/*
-!data/raw/.keep
-!data/raw/exclusion_branches.tsv
+
 
 # User added files
+data/raw/*.*
+data/raw/robot
+!data/raw/.keep
+!data/raw/exclusion_branches.tsv
+!data/raw/nlp/*
 kg_bacdive/transform_utils/*/tmp/*/*.yaml
 data/transformed/ontologies/*.tsv
-mediadive_cache.sqlite
+*.sqlite
 data/merged/*
-
+**/.DS_Store
diff --git a/data/raw/exclusion_branches.tsv b/data/raw/exclusion_branches.tsv
@@ -1,8 +1,8 @@
-28384
-33090
-33208
-1407750
-1145094
-119167
-590738
-10239
+NCBITaxon:28384
+NCBITaxon:33090
+NCBITaxon:33208
+NCBITaxon:1407750
+NCBITaxon:1145094
+NCBITaxon:119167
+NCBITaxon:590738
+NCBITaxon:10239
diff --git a/data/raw/nlp/output/chebi_ner.tsv b/data/raw/nlp/output/chebi_ner.tsv
diff --git a/data/raw/nlp/output/go_ner.tsv b/data/raw/nlp/output/go_ner.tsv