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Add petagraph entry #76

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Feb 4, 2025
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22 changes: 22 additions & 0 deletions _config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -712,6 +712,28 @@ resources:
name: ORCID in OWL OBO release
repository: https://github.com/cthoyt/orcidio
url: https://github.com/cthoyt/orcidio
- activity_status: active
category: KnowledgeGraph
contacts:
- category: Individual
label: Deanne M. Taylor
description: Petagraph is a large-scale biomedical knowledge graph integrating multi-omics
and clinical data, built on the Unified Biomedical Knowledge Graph (UBKG).
domain: health
id: petagraph
layout: resource_detail
license:
label: UMLS
url: https://www.nlm.nih.gov/databases/umls.html
name: Petagraph
products:
- category: GraphProduct
description: A multi-omics biomedical knowledge graph
id: petagraph
name: Petagraph Knowledge Graph (Neo4J)
url: https://ubkg-downloads.xconsortia.org/
repository: https://github.com/TaylorResearchLab/Petagraph
url: https://github.com/TaylorResearchLab/Petagraph
- activity_status: active
category: KnowledgeGraph
contacts:
Expand Down
30 changes: 30 additions & 0 deletions registry/kgs.jsonld
Original file line number Diff line number Diff line change
Expand Up @@ -956,6 +956,36 @@
"repository": "https://github.com/cthoyt/orcidio",
"url": "https://github.com/cthoyt/orcidio"
},
{
"activity_status": "active",
"category": "KnowledgeGraph",
"contacts": [
{
"category": "Individual",
"label": "Deanne M. Taylor"
}
],
"description": "Petagraph is a large-scale biomedical knowledge graph integrating multi-omics and clinical data, built on the Unified Biomedical Knowledge Graph (UBKG).",
"domain": "health",
"id": "petagraph",
"layout": "resource_detail",
"license": {
"label": "UMLS",
"url": "https://www.nlm.nih.gov/databases/umls.html"
},
"name": "Petagraph",
"products": [
{
"category": "GraphProduct",
"description": "A multi-omics biomedical knowledge graph",
"id": "petagraph",
"name": "Petagraph Knowledge Graph (Neo4J)",
"url": "https://ubkg-downloads.xconsortia.org/"
}
],
"repository": "https://github.com/TaylorResearchLab/Petagraph",
"url": "https://github.com/TaylorResearchLab/Petagraph"
},
{
"activity_status": "active",
"category": "KnowledgeGraph",
Expand Down
22 changes: 22 additions & 0 deletions registry/kgs.yml
Original file line number Diff line number Diff line change
Expand Up @@ -694,6 +694,28 @@ resources:
name: ORCID in OWL OBO release
repository: https://github.com/cthoyt/orcidio
url: https://github.com/cthoyt/orcidio
- activity_status: active
category: KnowledgeGraph
contacts:
- category: Individual
label: Deanne M. Taylor
description: Petagraph is a large-scale biomedical knowledge graph integrating multi-omics
and clinical data, built on the Unified Biomedical Knowledge Graph (UBKG).
domain: health
id: petagraph
layout: resource_detail
license:
label: UMLS
url: https://www.nlm.nih.gov/databases/umls.html
name: Petagraph
products:
- category: GraphProduct
description: A multi-omics biomedical knowledge graph
id: petagraph
name: Petagraph Knowledge Graph (Neo4J)
url: https://ubkg-downloads.xconsortia.org/
repository: https://github.com/TaylorResearchLab/Petagraph
url: https://github.com/TaylorResearchLab/Petagraph
- activity_status: active
category: KnowledgeGraph
contacts:
Expand Down
4 changes: 4 additions & 0 deletions registry/obo_context.jsonld
Original file line number Diff line number Diff line change
Expand Up @@ -112,6 +112,10 @@
"@id": "http://purl.obolibrary.org/obo/ORCID_",
"@prefix": true
},
"PETAGRAPH": {
"@id": "http://purl.obolibrary.org/obo/PETAGRAPH_",
"@prefix": true
},
"PHEKNOWLATOR": {
"@id": "http://purl.obolibrary.org/obo/PHEKNOWLATOR_",
"@prefix": true
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1 change: 1 addition & 0 deletions registry/obo_prefixes.ttl
Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,7 @@
,[ sh:prefix "NEO" ; sh:namespace "http://purl.obolibrary.org/obo/NEO_"]
,[ sh:prefix "ONTOLOGY-KP" ; sh:namespace "http://purl.obolibrary.org/obo/ONTOLOGY-KP_"]
,[ sh:prefix "ORCID" ; sh:namespace "http://purl.obolibrary.org/obo/ORCID_"]
,[ sh:prefix "PETAGRAPH" ; sh:namespace "http://purl.obolibrary.org/obo/PETAGRAPH_"]
,[ sh:prefix "PHEKNOWLATOR" ; sh:namespace "http://purl.obolibrary.org/obo/PHEKNOWLATOR_"]
,[ sh:prefix "PHENIO" ; sh:namespace "http://purl.obolibrary.org/obo/PHENIO_"]
,[ sh:prefix "PRIMEKG" ; sh:namespace "http://purl.obolibrary.org/obo/PRIMEKG_"]
Expand Down
27 changes: 27 additions & 0 deletions resource/petagraph.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,27 @@
---
layout: resource_detail
activity_status: active
id: petagraph
name: Petagraph
description: Petagraph is a large-scale biomedical knowledge graph integrating multi-omics and clinical data, built on the Unified Biomedical Knowledge Graph (UBKG).
domain: health
contacts:
- category: Individual
label: Deanne M. Taylor
url: https://github.com/TaylorResearchLab/Petagraph
repository: https://github.com/TaylorResearchLab/Petagraph
products:
- id: petagraph
name: Petagraph Knowledge Graph (Neo4J)
description: A multi-omics biomedical knowledge graph
url: https://ubkg-downloads.xconsortia.org/
category: GraphProduct
license:
label: UMLS
url: https://www.nlm.nih.gov/databases/umls.html
category: KnowledgeGraph
---

### Petagraph: A Scalable Biomedical Knowledge Graph

**Petagraph** is a **biomedical knowledge graph** designed to integrate **multi-omics and clinical data** into a **richly annotated ontology-driven structure**. Built on the **Unified Biomedical Knowledge Graph (UBKG)**, Petagraph connects genomic, transcriptomic, proteomic, and clinical data, supporting advanced biomedical research and machine learning applications.
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