Change name to state_dict

Kuanhao-Chao · Oct 24, 2024 · 2466522 · 2466522
1 parent 41438b0
commit 2466522
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Showing 4 changed files with 3 additions and 3 deletions.
diff --git a/model/splam_static.pt b/model/splam_static.pt
diff --git a/test/script_alignment.sh b/test/script_alignment.sh
@@ -2,7 +2,7 @@
 splam extract -P SRR1352129_chr9_sub.bam -o tmp_out_alignment --fr
 
 # Step 2: score all the extracted splice junctions
-splam score -G chr9_subset.fa -m ../model/splam_static.pt -o tmp_out_alignment tmp_out_alignment/junction.bed
+splam score -G chr9_subset.fa -m ../model/splam_state_dict.pt -o tmp_out_alignment tmp_out_alignment/junction.bed
 
 #Step 3: output the cleaned alignment file
 splam clean -P -o tmp_out_alignment -@ 5
diff --git a/test/script_annotation.sh b/test/script_annotation.sh
@@ -3,7 +3,7 @@
 splam extract MANE.GRCh38.v1.1.subset.gff -o tmp_out_annotation_MANE -F feature_gene.txt
 
 # Step 2: score introns in the annotation
-splam score -G chr9_subset.fa -m ../model/splam_static.pt -o tmp_out_annotation_MANE tmp_out_annotation_MANE/junction.bed
+splam score -G chr9_subset.fa -m ../model/splam_state_dict.pt -o tmp_out_annotation_MANE tmp_out_annotation_MANE/junction.bed
 
 #Step 3: output statistics of each transcript
 splam clean -o tmp_out_annotation_MANE -t 0.8
diff --git a/test/script_mouse_annotation.sh b/test/script_mouse_annotation.sh
@@ -2,7 +2,7 @@
 splam extract mouse_chr19_subset.gff -o tmp_out_generalization
 
 # Step 2: score introns in the annotation
-splam score -G mouse_chr19.fa -m ../model/splam_static.pt -o tmp_out_generalization tmp_out_generalization/junction.bed
+splam score -G mouse_chr19.fa -m ../model/splam_state_dict.pt -o tmp_out_generalization tmp_out_generalization/junction.bed
 
 #Step 3: output statistics of each transcript
 splam clean -o tmp_out_generalization -t 0.8