fixing after update

augur/analyze.py

@@ -129,7 +129,6 @@ def f(self, x, labels, pars_fid, sys_fid):
                 self.lk.reset()
                 cosmo = ccl.Cosmology(**_pars)
                 self.lk.update(ParamsMap(_sys_pars))
-                self.tools.update(ParamsMap(_sys_pars))
                 self.tools.prepare(cosmo)
                 f_out = self.lk.compute_theory_vector(self.tools)
             elif x.ndim == 2:
@@ -148,7 +147,6 @@ def f(self, x, labels, pars_fid, sys_fid):
                     self.tools.reset()
                     self.lk.reset()
                     self.lk.update(ParamsMap(_sys_pars))
-                    self.tools.update(ParamsMap(_sys_pars))
                     cosmo = ccl.Cosmology(**_pars)
                     self.tools.prepare(cosmo)
                     f_out.append(self.lk.compute_theory_vector(self.tools))

augur/generate.py

@@ -18,7 +18,7 @@
 from firecrown.likelihood.gauss_family.gaussian import ConstGaussian
 from firecrown.modeling_tools import ModelingTools
 from firecrown.parameters import ParamsMap
-from augur.utils.config_io import parse_config
+
 
 implemented_nzs = [ZDist, LensSRD2018, SourceSRD2018]
 
@@ -292,7 +292,6 @@ def generate(config, return_all_outputs=False, write_sacc=True, force_read=True)
     cosmo.compute_nonlin_power()
     tools = ModelingTools(pt_calculator=pt_calculator)
     lk.update(sys_params)
-    tools.update(sys_params)
     tools.prepare(cosmo)
     # Run the likelihood (to get the theory)
     lk.compute_loglike(tools)

augur/tests/test_generate.py

@@ -2,6 +2,6 @@
 from ..generate import generate
 
 
-def test_generate(example_yaml):
-    generate(example_yaml)
+def test_generate():
+    generate('./examples/srd_y1_3x2.yaml')
     assert os.path.isfile(example_yaml['generate']['two_point']['sacc_file'])