Example not working for single cell pipeline

[dominguezjorge]

Could you update and example for running the single cell pipeline?
When trying specify --fq_dir to the fasta directory it crashes. However, using --infq and using a single fastq file crashes with "ot enough values to unpack (expected 2, got 1) : ('not enough values to unpack (expected 2, got 1)',)".

Any insights? Could you please maybe provide an example to run the code with data from single cell?
Thanks