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29 Open 15 Closed
29 Open 15 Closed
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Issues list

Low number of isoforms detected
#55 opened Dec 5, 2024 by jadedavis5
FLAMES would reverse the strand
#54 opened Oct 16, 2024 by MSQ-123
Example not working for single cell pipeline
#53 opened Sep 17, 2024 by dominguezjorge
Facing error with minimap2 when running single cell long pipeline.py
#52 opened Jul 16, 2024 by Aravind-sunda
versions for conda dependencies
#49 opened Jun 5, 2024 by nick-youngblut
2
Transcript information
#48 opened Apr 3, 2024 by hyeon9
Gene name instead of gene_ID
#47 opened Apr 3, 2024 by rania-o
transcript id name
#46 opened Feb 26, 2024 by Qirongmao97
bam_mutations.py
#45 opened Jan 22, 2024 by choudharis2
error in transcript quantification step
#44 opened Dec 9, 2023 by sparthib
Run FLAMES directly from an aligned bam file.
#42 opened Sep 26, 2023 by PT806
How to use multiple cores
#41 opened Sep 18, 2023 by lingminhao
Missing mitochondrial transcripts in isoform_annotated.gff3
#40 opened Jun 29, 2023 by koehlek99
Adapt match_cell_barcode to custom Barcode and UMI Length
#39 opened Jun 11, 2023 by stambolliualen
sc_long_pipeline.py--> ValueError: invalid contig chr1
#37 opened Jan 16, 2023 by jeneaadams
10
Flanking sequence match
#35 opened Dec 5, 2022 by lingminhao
3
FSM and FSM-match to ref
#28 opened Aug 4, 2022 by parsboy66
Config file parameters
#23 opened Apr 20, 2022 by hacaoe
1
Using transcript_count.csv.gz matrix with popular analysis tools
#21 opened Apr 5, 2022 by rakszewska
1
What's the difference
#18 opened Mar 28, 2022 by haowBio
1
match_cell_barcode qnames too long
#16 opened Mar 1, 2022 by danledinh
2
Compute resource allocation?
#15 opened Feb 19, 2022 by danledinh
2
single cell full length RNA-seq mutation detection
#14 opened Dec 29, 2021 by garfield-hu
minimap error using sc_long_pipeline.py
#13 opened Jan 31, 2021 by aheravi
1
run match_cell_barcode, no error, no result, match_cell_barcode /data_RAGE_seq/data1 cell_barcode_stat.txt split_barcode.fastq flame_3M-february-2018.txt 2; split_barcode.fastq is zero,no other file generation。
#12 opened Jan 10, 2021 by markme123
7
ProTip! Updated in the last three days: updated:>2025-01-13.