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Sequential Inference (Non-MP) #2705

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LennyN95 wants to merge 2 commits into MIC-DKFZ:master from LennyN95:sequential_inference

LennyN95 commented Feb 17, 2025

This PR resolves #2556.
Improved implementation following #2614.

Implementation of preprocessing based on a single process
Introduce new environment variables nnUNet_npp and nnUNet_nps to set -npp and -nps
Using the new use predict_from_files_sequential function

We have done some internal testing and get identical results between the latest nnunetv2==2.5.1 and with our proposed patch.

LennyN95 added 2 commits

February 17, 2025 17:11


          add nnUNet_npp and nnUNet_nps environment variables

5787a9a


          use predict_from_files_sequential when nps and npp are zero

3f32df8

LennyN95 mentioned this pull request

Optional Torch Multiprocessing in nnUNet for Improved Security and Compatibility #2614

Closed

FabianIsensee self-assigned this

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