Merge pull request #402 from MetaCell/feature/392

Python 3.9 upgrade

README.md

@@ -71,7 +71,7 @@ Python 3.7-3.9 must be installed.
 It is recommended to setup a virtual environment.
 With conda: 
  ```bash
- conda create --name ch python=3.7
+ conda create --name ch python=3.9
  conda activate ch
  ```
 

infrastructure/base-images/cloudharness-base-debian/Dockerfile

@@ -1,4 +1,4 @@
-ARG PARENT=python:3.7.6
+ARG PARENT=python:3.9.10
 FROM ${PARENT}
 
 COPY libraries/cloudharness-common/requirements.txt /libraries/cloudharness-common/requirements.txt

infrastructure/base-images/cloudharness-base/Dockerfile

@@ -1,4 +1,4 @@
-ARG PARENT=python:3.7.9-alpine
+ARG PARENT=python:3.9.10-alpine
 FROM ${PARENT}
 
 RUN apk update

libraries/client/cloudharness_cli/setup.py

@@ -38,5 +38,6 @@
     license="UNLICENSED",
     long_description="""\
     CloudHarness Python API Client  # noqa: E501
-    """
+    """,
+    python_requires='>=3.9'
 )

libraries/cloudharness-common/setup.py

@@ -39,5 +39,6 @@
     package_data={'': ['*.yaml']},
     long_description="""\
     Cloudharness common library
-    """
+    """,
+    python_requires='>=3.9'
 )

libraries/cloudharness-common/test-requirements.txt

@@ -1,9 +1,9 @@
-coverage>=4.0.3
-nose>=1.3.7
-pluggy>=0.3.1
-py>=1.4.31
-randomize>=0.13
-pytest>=5.0.0
-pytest-cov
+coverage==6.3.2
+nose==1.3.7
+randomize==0.14
+py==1.11.0
+pyparsing==3.0.8
+pytest==7.1.2
+pytest-cov==3.0.0
 -e .
 -e ../client/cloudharness_cli

libraries/cloudharness-common/tox.ini

@@ -1,5 +1,5 @@
 [tox]
-envlist = py3
+envlist = py3{9,}
 
 [testenv]
 deps=-r{toxinidir}/test-requirements.txt

tools/Dockerfile

@@ -1,4 +1,4 @@
-FROM python:3.7-alpine
+FROM python:3.9.10-alpine
 ENV DEPLOY_DIR=deployment
 
 COPY . cloudharness_utilities

tools/cloudharness_utilities/constants.py

@@ -28,7 +28,7 @@
 VALUES_MANUAL_PATH = 'values.yaml'
 VALUE_TEMPLATE_PATH = f'{DEPLOYMENT_CONFIGURATION_PATH}/value-template.yaml'
 
-CH_BASE_IMAGES = {'cloudharness-base': 'python:3.7-alpine', 'cloudharness-base-debian': 'python:3.7'}
+CH_BASE_IMAGES = {'cloudharness-base': 'python:3.9.10-alpine', 'cloudharness-base-debian': 'python:3.9.10'}
 
 
 CF_BUILD_STEP_BASE = 'build_base_images'

tools/cloudharness_utilities/deployment-configuration/codefresh-template-dev.yaml

@@ -26,7 +26,7 @@ steps:
         git: github
   prepare_deployment:
     title: "Prepare helm chart"
-    image: python:3.7
+    image: python:3.9.10
     stage: prepare
     working_directory: .
     commands:

tools/cloudharness_utilities/deployment-configuration/codefresh-template-prod.yaml

@@ -25,7 +25,7 @@ steps:
         git: github
   prepare_deployment:
     title: "Prepare helm chart"
-    image: python:3.7
+    image: python:3.9.10
     stage: prepare
     working_directory: .
     commands:

tools/cloudharness_utilities/deployment-configuration/helm/README.md

@@ -1,3 +1,4 @@
 # CloudHarness Helm chart: deploy CloudHarness to k8s
 
 Helm is used to define the CloudHarness deployment on Kubernetes. For further information about Helm, see https://helm.sh.
+

tools/setup.py

@@ -40,6 +40,7 @@
     include_package_data=True,
     scripts=['harness-deployment', 'harness-generate', 'harness-application'],
     long_description="""\
-    CloudHarness deploy library
-    """
+    MetaCell Neuroscience Platform - CloudHarness deploy library
+    """,
+    python_requires='>=3.9'
 )

tools/test-requirements.txt

@@ -1,8 +1,8 @@
-coverage>=4.0.3
-nose>=1.3.7
-pluggy>=0.3.1
-py>=1.4.31
-randomize>=0.13
-pytest>=5.0.0
-pytest-cov
--e .
+coverage==6.3.2
+nose==1.3.7
+randomize==0.14
+py==1.11.0
+pyparsing==3.0.8
+pytest==7.1.2
+pytest-cov==3.0.0
+-e .

tools/tox.ini

@@ -1,9 +1,9 @@
 [tox]
-envlist = py3
+envlist = py3{9,}
 
 [testenv]
 deps=-r{toxinidir}/test-requirements.txt
 
 commands=
     coverage run --source cloudharness_utilities -m pytest -v
-    coverage report -m
+    coverage report -m