Updated MOD file to fix the issue with the upcoming NEURON 9.0 release (

#1) * Updated MOD file to fix the issue with the upcoming NEURON 9.0 release USEION variable can not be initialized in a CONSTANT block. See neuronsimulator/nrn#1955. * fix missing declaration of cao
ModelDBRepository · Sep 23, 2022 · b1a2777 · b1a2777
1 parent 8151133
commit b1a2777
Show file tree

Hide file tree

Showing 4 changed files with 13 additions and 9 deletions.
diff --git a/01_GrC_2020_regular/mod_files/cdp5_CR.mod b/01_GrC_2020_regular/mod_files/cdp5_CR.mod
@@ -98,12 +98,11 @@ ASSIGNED {
 	parea     (um)     : pump area per unit length
 	parea2	  (um)
 	cai       (mM)
+	cao       (mM)
 	mgi	(mM)
 	vrat	(1)	
 }
 
-CONSTANT { cao = 2	(mM) }
-
 STATE {
 	: ca[0] is equivalent to cai
 	: ca[] are very small, so specify absolute tolerance
@@ -304,4 +303,4 @@ FUNCTION ssDMNPE() (mM) {
 
 FUNCTION ssDMNPEca() (mM) {
 	ssDMNPEca = DMNPEnull/(1+(c2/(c1*cainull)))
-}
+}
diff --git a/02_GrC_2020_mild_adapting/mod_files/cdp5_CR.mod b/02_GrC_2020_mild_adapting/mod_files/cdp5_CR.mod
@@ -98,12 +98,11 @@ ASSIGNED {
 	parea     (um)     : pump area per unit length
 	parea2	  (um)
 	cai       (mM)
+	cao       (mM)
 	mgi	(mM)
 	vrat	(1)	
 }
 
-CONSTANT { cao = 2	(mM) }
-
 STATE {
 	: ca[0] is equivalent to cai
 	: ca[] are very small, so specify absolute tolerance
@@ -304,4 +303,4 @@ FUNCTION ssDMNPE() (mM) {
 
 FUNCTION ssDMNPEca() (mM) {
 	ssDMNPEca = DMNPEnull/(1+(c2/(c1*cainull)))
-}
+}
diff --git a/03_GrC_2020_adapting/mod_files/cdp5_CR.mod b/03_GrC_2020_adapting/mod_files/cdp5_CR.mod
@@ -98,12 +98,11 @@ ASSIGNED {
 	parea     (um)     : pump area per unit length
 	parea2	  (um)
 	cai       (mM)
+	cao       (mM)
 	mgi	(mM)
 	vrat	(1)	
 }
 
-CONSTANT { cao = 2	(mM) }
-
 STATE {
 	: ca[0] is equivalent to cai
 	: ca[] are very small, so specify absolute tolerance
@@ -304,4 +303,4 @@ FUNCTION ssDMNPE() (mM) {
 
 FUNCTION ssDMNPEca() (mM) {
 	ssDMNPEca = DMNPEnull/(1+(c2/(c1*cainull)))
-}
+}
diff --git a/readme.html b/readme.html
@@ -87,4 +87,11 @@
 A Live Paper can be found on the HBP Brain Simulation Platform.
 <a href="https://collab.humanbrainproject.eu/#/collab/1655/nav/306845">https://collab.humanbrainproject.eu/#/collab/1655/nav/306845</a>
 
+
+Changelog
+---------
+
+cdp5*.mod files are updated due to issue mentioned in https://github.com/neuronsimulator/nrn/pull/1955.
+CONSTANT block has no effect in the initialization of ion variables.
+
 </pre></html>