Fix order of example reports on homepage

MultiQC · Sep 17, 2024 · d9a1605 · d9a1605
1 parent ca9a028
commit d9a1605
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Showing 9 changed files with 11 additions and 2 deletions.
diff --git a/src/content/config.ts b/src/content/config.ts
@@ -10,6 +10,7 @@ const reportCollection = defineCollection({
     embed: z.string(),
     zip: z.string(),
     data: z.string(),
+    priority: z.number(),
   }),
 });
 

diff --git a/src/content/example-reports/bisulfite-seq.md b/src/content/example-reports/bisulfite-seq.md
@@ -5,6 +5,7 @@ type: Analysis Types
 embed: /examples/bs-seq/multiqc_report.html
 zip: /examples/bs-seq/multiqc_report.zip
 data: /examples/bs-seq/data.zip
+priority: 30
 ---
 
 The example methylation report is based on analysis of data from the GEO NCBI project [GSE47966](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47966), from the 2013 Lister _et. al._ paper _Global epigenomic reconfiguration during mammalian brain development_.

diff --git a/src/content/example-reports/hi-c.md b/src/content/example-reports/hi-c.md
@@ -5,6 +5,7 @@ type: Analysis Types
 embed: /examples/hi-c/multiqc_report.html
 zip: /examples/hi-c/multiqc_report.zip
 data: /examples/hi-c/data.zip
+priority: 40
 ---
 
 This Hi-C MultiQC report was generated using Hi-C data from [Louise Harewood](mailto:[email protected]) at [CRUK Cambridge Institute](http://www.cambridgecancer.org.uk/). Reads were run through [FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) and then processed using [HiCUP](http://www.bioinformatics.babraham.ac.uk/projects/hicup/) (Hi-C User Pipeline).

diff --git a/src/content/example-reports/jupyter.md b/src/content/example-reports/jupyter.md
@@ -5,6 +5,7 @@ type: Analysis Types
 embed: /examples/jupyter/notebook.html
 zip: /examples/jupyter/multiqc_report.zip
 data: /examples/jupyter/data.zip
+priority: 60
 ---
 
 Show how data can be summarized interactively without use of intermediate custom content, on the example of the [nf-core/viralrecon](https://github.com/nf-core/viralrecon) workflow. The ipynb file for the notebook is included into the "Download full report output" bundle.
diff --git a/src/content/example-reports/multiqc-ngi.md b/src/content/example-reports/multiqc-ngi.md
@@ -5,6 +5,7 @@ type: MultiQC Customisation
 embed: /examples/ngi-rna/test_ngi_project_multiqc_report.html
 zip: /examples/ngi-rna/multiqc_report.zip
 data: /examples/ngi-rna/data.zip
+priority: 50
 ---
 
 This MultiQC report was generated in combination with the [MultiQC_NGI](https://github.com/NationalGenomicsInfrastructure/MultiQC_NGI) plugin. This plugin adds a few new functionalities to MultiQC which are specific to the [SciLifeLab National Genomics Infrastruture](https://www.scilifelab.se/platforms/ngi/). A new report template (**ngi**) styles reports with our logo. A new module (**NGI-RNAseq**) adds sample similarity plots generated from custom code in our [RNA pipeline](https://github.com/SciLifeLab/NGI-RNAseq). It also loads intersting data fields from our LIMS (eg. RIN score) and puts these into the report. Finally, it saves the parsed biofinformatics summary results back in the LIMS for multi-project meta analyses.

diff --git a/src/content/example-reports/rna-seq.md b/src/content/example-reports/rna-seq.md
@@ -5,6 +5,7 @@ type: Analysis Types
 embed: /examples/rna-seq/multiqc_report.html
 zip: /examples/rna-seq/multiqc_report.zip
 data: /examples/rna-seq/data.zip
+priority: 10
 ---
 
 This report was generated using logs from an analysis accidentally run on ChIP-Seq data from the BI Human Reference Epigenome Mapping Project: ChIP-Seq in human subject dataset ([SRP001534](http://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP001534)).

diff --git a/src/content/example-reports/whole-genome-seq.md b/src/content/example-reports/whole-genome-seq.md
@@ -5,6 +5,7 @@ type: Analysis Types
 embed: /examples/wgs/multiqc_report.html
 zip: /examples/wgs/multiqc_report.zip
 data: /examples/wgs/data.zip
+priority: 20
 ---
 
 The data from this report comes from an analysis of HapMap trio samples, run by the [National Genomics Infrastructre](https://www.scilifelab.se/platforms/ngi/) (NGI) at SciLifeLab, Sweden. Initial quality control was done using [FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) and [FastQ Screen](http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/). Reads were processed with [GATK](https://www.broadinstitute.org/gatk/) and the aligned reads analysed using [Picard](http://broadinstitute.github.io/picard/). Downstream QC was done using [Qualimap BamQC](http://qualimap.bioinfo.cipf.es/) and [SnpEff](http://snpeff.sourceforge.net/).

diff --git a/src/multiqc_releases.json b/src/multiqc_releases.json
@@ -1 +1 @@
-{"latest":"v1.24.1","latest_published_at":"2024-08-21T11:27:14Z"}
+{"latest":"v1.25","latest_published_at":"2024-09-17T08:29:00Z"}
diff --git a/src/pages/index.astro b/src/pages/index.astro
@@ -33,7 +33,9 @@ const latestRelease = await fetch("https://api.github.com/repos/MultiQC/MultiQC/
     }
   });
 
-const exampleReports = await getCollection("example-reports");
+const exampleReports = (await getCollection("example-reports")).sort(
+  (a, b) => a.data.priority - b.data.priority,
+);
 const modules = await getCollection("modules");
 ---
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		{"latest":"v1.24.1","latest_published_at":"2024-08-21T11:27:14Z"}
		{"latest":"v1.25","latest_published_at":"2024-09-17T08:29:00Z"}