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Feature/gfsv16b update from emc #5

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christopherwharrop-noaa
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Small update to feature/gfsv16b from EMC.

RussTreadon-NOAA and others added 4 commits June 10, 2020 14:36
output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.
@christopherwharrop-noaa christopherwharrop-noaa merged commit f0301a5 into feature/gfsv16b-cloud Jun 15, 2020
@christopherwharrop-noaa christopherwharrop-noaa deleted the feature/gfsv16b-update-from-emc branch June 15, 2020 16:03
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
- Remove module files no longer needed for gridbull, navybull, trpsfcmv, overpdtg2, and wintemv
- Add Orion blocks to module-setup.csh.inc and module-setup.sh.inc
- Update Orion module_base with contrib and rocoto
- Update Orion module initilization in machine-setup.sh
- Fix syntax error in setup_workflow_fcstonly.py
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
…tes to build enkf_chgres_recenter and prelimiary updates to build enkf_chgres_recenter_nc
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
…recast, analysis, and post jobs on Orion
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
…ulti-prog env updates for Hera/Orion, and increase in the analdiag task number
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
…r setup scripts

- update to GLDAS dependency to require prior cycle (for half-cycle starting)
- update to config.vrfy for testing tracker on Orion
- update to rocoto viewer to add produtil path and support for Orion
- added restart (--start) flag to setup-expt*py scripts: not required, value is "warm" or "cold", default is "cold" (warm start false), and argument sets EXP_WARM_START setting in config.base
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
* feature/gfsv16b:
  modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9
  Issue NOAA-GSL#1 - Hotfix to update anaconda module contrib path on Hera
  Issue NOAA-GSL#1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

Conflicts:
	parm/config/config.base.emc.dyn
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
* feature/gfsv16b:
  modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel
  update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.
  Issue NOAA-GSL#1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag
  modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA
  Issue NOAA-GSL#1 - update Externals.cfg to match updates to checkout.sh
  Update exwave_post_sbs.sh
  Adapting wavepostsbs for running on Hera
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
* feature/gfsv16b:
  Update config.resources
  Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0
  Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env
  Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst
  add checkout.sh to test on Dell
  Commit changes from debugging addition of chgresfcst on hera
  First draft to add chgresfcst to rocoto workflow
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
* feature/gfsv16b:
  Update README.md
  modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7    and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:
  Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
* feature/gfsv16b:
  fix for exiting properly with error for wave prep/init scripts
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
* feature/gfsv16b:
  modified:   config.vrfy to add     elif [ $machine = "HERA" ] ; then         export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"
  corrected a typo in  hpssarch_gen.sh -     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt +     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt
  modified:   config.vrfy to point a different syndat directory on Hera        export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"        export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}
  Issue NOAA-GSL#1:  HPSS archive and MOS script changes
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
* feature/gfsv16b:
  modified:   checkout.sh to checkout model tag GFS.v16.0.9
  Issue NOAA-GSL#1:  set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA"
  Issue NOAA-GSL#1:  update sorc/checkout.sh to checkout verif_global_v1.9.0
  further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle  as well
  modified:   jobs/JGLOBAL_FORECAST   parm/config/config.wave   scripts/exglobal_fcst_nemsfv3gfs.sh     add WW3 break-point restart capability and clean up forecast script.

Conflicts:
	sorc/checkout.sh
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
* feature/gfsv16b:
  modified:   ../Externals.cfg  and   checkout.sh to check out             UPP tag tag upp_gfsv16_release.v1.0.10  and model tag GFS.v16.0.10             Updated the algorithm used to compute CAPE and CIN in UPP.  The computation             is now bounded from the surface up to 1 hPa instead of the model top to             avoid producing erroneous large CAPE and CIN values.
  Issue NOAA-GSL#1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
* feature/gfsv16b:
  Issue NOAA-GSL#1:  refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env
  Issue NOAA-GSL#1:  add enkf member sfcf006.nc to enkf tarballs
  Revert "modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos"
  modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021
jderrico-noaa pushed a commit that referenced this pull request Jan 29, 2024
- updated INFO file

Squashed commit of the following:

commit be717ce
Merge: df8dc52 99277ae
Author: Kate.Friedman <[email protected]>
Date:   Tue Jun 23 16:20:51 2020 +0000

    Issue #5 - Sync merge branch 'feature/gfsv16b' into port2orion

    * feature/gfsv16b:
      Update README.md
      modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7    and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:
      Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

commit 99277ae
Merge: 14dd3c9 4f8d5a5
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 23 16:05:16 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 4f8d5a5
Author: Kate Friedman <[email protected]>
Date:   Tue Jun 23 11:57:26 2020 -0400

    Update README.md

    Remove use/mention of manage_externals until checkout.sh is retired.

commit 14dd3c9
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 23 15:53:11 2020 +0000

    modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
       and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

    1) Inline POST Issues NOAA-EMC#136 and $142
       * Update ceiling height calculation for global FV3.
       * add low,middle,high instantaneous cloud fraction
       * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
       * fix a bug in initializing DBZI
       * output mixed layer CAPE/CIN
       * remove simulated GOES-12 brightness temperature.
       * change the names of time averaged low/mid/high cloud fractions in grib2 files
         from "TCDC" to "LCDC/MCDC/HCDC", respectively.

    2) Model Issue NOAA-EMC#152
       * update in-line post control files
       * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

commit dd76002
Merge: df89cc8 dd599ea
Author: Kate Friedman <[email protected]>
Date:   Tue Jun 23 11:34:40 2020 -0400

    Merge pull request NOAA-EMC#91 from christopherwharrop-noaa/feature/fix_externals

    Update version of upp in Externals.cfg to be consistent with sorc/che…

commit dd599ea
Author: Christopher Harrop <[email protected]>
Date:   Tue Jun 23 15:25:08 2020 +0000

    Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

commit df8dc52
Merge: ff46607 df89cc8
Author: Kate.Friedman <[email protected]>
Date:   Mon Jun 22 14:41:17 2020 +0000

    Issue #5 - Sync merge branch 'feature/gfsv16b' into port2orion

    * feature/gfsv16b:
      Update config.resources
      Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0
      Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env
      Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst
      add checkout.sh to test on Dell
      Commit changes from debugging addition of chgresfcst on hera
      First draft to add chgresfcst to rocoto workflow

commit df89cc8
Author: RussTreadon-NOAA <[email protected]>
Date:   Fri Jun 19 18:40:26 2020 -0400

    Update config.resources

    Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

commit ff8cd28
Merge: 1dd83b8 965ff42
Author: russ.treadon <[email protected]>
Date:   Thu Jun 18 20:07:59 2020 +0000

    Issue #1:  merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b

commit 965ff42
Author: russ.treadon <[email protected]>
Date:   Thu Jun 18 20:02:23 2020 +0000

    Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0

commit ff46607
Merge: ed6b279 1dd83b8
Author: Kate.Friedman <[email protected]>
Date:   Wed Jun 17 17:23:44 2020 +0000

    Issue #5 - Sync merge branch 'feature/gfsv16b' into port2orion

    * feature/gfsv16b:
      modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel
      update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.
      Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag
      modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA
      Issue #1 - update Externals.cfg to match updates to checkout.sh
      Update exwave_post_sbs.sh
      Adapting wavepostsbs for running on Hera

commit 71d7141
Author: russ.treadon <[email protected]>
Date:   Tue Jun 16 20:11:33 2020 +0000

    Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

commit 1dd83b8
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 16 16:07:45 2020 +0000

    modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

commit eb0e3b4
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 16 14:43:29 2020 +0000

    update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

commit dfc76f0
Author: Kate.Friedman <[email protected]>
Date:   Tue Jun 16 13:32:01 2020 +0000

    Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

commit 7078bb5
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 16 13:22:43 2020 +0000

    modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
    modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

commit 15d5bed
Author: russ.treadon <[email protected]>
Date:   Mon Jun 15 20:47:47 2020 +0000

    Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst

commit d878269
Author: Kate.Friedman <[email protected]>
Date:   Mon Jun 15 16:00:35 2020 +0000

    Issue #1 - update Externals.cfg to match updates to checkout.sh

commit a2bd621
Merge: 22b735d 295cd05
Author: Kate Friedman <[email protected]>
Date:   Mon Jun 15 11:57:14 2020 -0400

    Merge pull request NOAA-EMC#84 from NOAA-EMC/feature/gfsv16b_herawavepost

    Adapting wavepostsbs for running on Hera

commit 295cd05
Author: Jose-Henrique Alves <[email protected]>
Date:   Mon Jun 15 11:53:13 2020 -0400

    Update exwave_post_sbs.sh

    Removing obsolete nm variable entries

commit 58d1139
Author: henrique.alves <[email protected]>
Date:   Thu Jun 11 02:44:41 2020 +0000

    Adapting wavepostsbs for running on Hera

commit c330e60
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Jun 10 21:17:00 2020 +0000

    add checkout.sh to test on Dell

commit 201609b
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Jun 10 20:51:51 2020 +0000

    Commit changes from debugging addition of chgresfcst on hera

commit fc3066c
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Jun 10 14:19:07 2020 +0000

    First draft to add chgresfcst to rocoto workflow
NeilBarton-NOAA added a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 22, 2024
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6 participants