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Feature/gfsv16b update from emc #5
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christopherwharrop-noaa
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feature/gfsv16b-cloud
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Jun 15, 2020
Merged
Feature/gfsv16b update from emc #5
christopherwharrop-noaa
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feature/gfsv16b-cloud
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feature/gfsv16b-update-from-emc
Jun 15, 2020
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…h GFS v16 real-time parallel config.base
output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu.
danielabdi-noaa
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jqs-noaa
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- Remove module files no longer needed for gridbull, navybull, trpsfcmv, overpdtg2, and wintemv - Add Orion blocks to module-setup.csh.inc and module-setup.sh.inc - Update Orion module_base with contrib and rocoto - Update Orion module initilization in machine-setup.sh - Fix syntax error in setup_workflow_fcstonly.py
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…tes to build enkf_chgres_recenter and prelimiary updates to build enkf_chgres_recenter_nc
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…es for running fcst and prep
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…recast, analysis, and post jobs on Orion
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…ulti-prog env updates for Hera/Orion, and increase in the analdiag task number
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Conflicts: env/HERA.env sorc/checkout.sh
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…fficial NCEPLIBS
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…r setup scripts - update to GLDAS dependency to require prior cycle (for half-cycle starting) - update to config.vrfy for testing tracker on Orion - update to rocoto viewer to add produtil path and support for Orion - added restart (--start) flag to setup-expt*py scripts: not required, value is "warm" or "cold", default is "cold" (warm start false), and argument sets EXP_WARM_START setting in config.base
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* feature/gfsv16b: modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 Issue NOAA-GSL#1 - Hotfix to update anaconda module contrib path on Hera Issue NOAA-GSL#1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base Conflicts: parm/config/config.base.emc.dyn
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* feature/gfsv16b: modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. Issue NOAA-GSL#1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA Issue NOAA-GSL#1 - update Externals.cfg to match updates to checkout.sh Update exwave_post_sbs.sh Adapting wavepostsbs for running on Hera
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* feature/gfsv16b: Update config.resources Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst add checkout.sh to test on Dell Commit changes from debugging addition of chgresfcst on hera First draft to add chgresfcst to rocoto workflow
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* feature/gfsv16b: Update README.md modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh
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* feature/gfsv16b: fix for exiting properly with error for wave prep/init scripts
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* feature/gfsv16b: modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} Issue NOAA-GSL#1: HPSS archive and MOS script changes
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* feature/gfsv16b: modified: checkout.sh to checkout model tag GFS.v16.0.9 Issue NOAA-GSL#1: set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA" Issue NOAA-GSL#1: update sorc/checkout.sh to checkout verif_global_v1.9.0 further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle as well modified: jobs/JGLOBAL_FORECAST parm/config/config.wave scripts/exglobal_fcst_nemsfv3gfs.sh add WW3 break-point restart capability and clean up forecast script. Conflicts: sorc/checkout.sh
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* feature/gfsv16b: modified: ../Externals.cfg and checkout.sh to check out UPP tag tag upp_gfsv16_release.v1.0.10 and model tag GFS.v16.0.10 Updated the algorithm used to compute CAPE and CIN in UPP. The computation is now bounded from the surface up to 1 hPa instead of the model top to avoid producing erroneous large CAPE and CIN values. Issue NOAA-GSL#1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh
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….env if-block for CFP_MP
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…mmitting build fix to it
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…branch and build update
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…NO on Orion by default
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* feature/gfsv16b: Issue NOAA-GSL#1: refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env Issue NOAA-GSL#1: add enkf member sfcf006.nc to enkf tarballs Revert "modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos" modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos
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…for waveinit job settings
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…e/ops-gfsv16 branch after commit to it
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- updated INFO file Squashed commit of the following: commit be717ce Merge: df8dc52 99277ae Author: Kate.Friedman <[email protected]> Date: Tue Jun 23 16:20:51 2020 +0000 Issue #5 - Sync merge branch 'feature/gfsv16b' into port2orion * feature/gfsv16b: Update README.md modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit 99277ae Merge: 14dd3c9 4f8d5a5 Author: fanglin.yang <[email protected]> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5 Author: Kate Friedman <[email protected]> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c9 Author: fanglin.yang <[email protected]> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues NOAA-EMC#136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue NOAA-EMC#152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002 Merge: df89cc8 dd599ea Author: Kate Friedman <[email protected]> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request NOAA-EMC#91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599ea Author: Christopher Harrop <[email protected]> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df8dc52 Merge: ff46607 df89cc8 Author: Kate.Friedman <[email protected]> Date: Mon Jun 22 14:41:17 2020 +0000 Issue #5 - Sync merge branch 'feature/gfsv16b' into port2orion * feature/gfsv16b: Update config.resources Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst add checkout.sh to test on Dell Commit changes from debugging addition of chgresfcst on hera First draft to add chgresfcst to rocoto workflow commit df89cc8 Author: RussTreadon-NOAA <[email protected]> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28 Merge: 1dd83b8 965ff42 Author: russ.treadon <[email protected]> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff42 Author: russ.treadon <[email protected]> Date: Thu Jun 18 20:02:23 2020 +0000 Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 commit ff46607 Merge: ed6b279 1dd83b8 Author: Kate.Friedman <[email protected]> Date: Wed Jun 17 17:23:44 2020 +0000 Issue #5 - Sync merge branch 'feature/gfsv16b' into port2orion * feature/gfsv16b: modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA Issue #1 - update Externals.cfg to match updates to checkout.sh Update exwave_post_sbs.sh Adapting wavepostsbs for running on Hera commit 71d7141 Author: russ.treadon <[email protected]> Date: Tue Jun 16 20:11:33 2020 +0000 Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b8 Author: fanglin.yang <[email protected]> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4 Author: fanglin.yang <[email protected]> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0 Author: Kate.Friedman <[email protected]> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5 Author: fanglin.yang <[email protected]> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed Author: russ.treadon <[email protected]> Date: Mon Jun 15 20:47:47 2020 +0000 Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst commit d878269 Author: Kate.Friedman <[email protected]> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621 Merge: 22b735d 295cd05 Author: Kate Friedman <[email protected]> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request NOAA-EMC#84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05 Author: Jose-Henrique Alves <[email protected]> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 58d1139 Author: henrique.alves <[email protected]> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60 Author: CoryMartin-NOAA <[email protected]> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b Author: CoryMartin-NOAA <[email protected]> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit fc3066c Author: CoryMartin-NOAA <[email protected]> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow
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Small update to feature/gfsv16b from EMC.