Merge pull request #219377 from fabaff/pybigwig-bump

python310Packages.pybigwig: 0.3.18 -> 0.3.20

pkgs/development/python-modules/pybigwig/default.nix

@@ -1,32 +1,60 @@
 { lib
 , buildPythonPackage
-, fetchPypi
-, pytest
+, fetchFromGitHub
 , numpy
+, pytestCheckHook
+, pythonOlder
 , zlib
 }:
 
 buildPythonPackage rec {
-  pname = "pyBigWig";
-  version = "0.3.18";
+  pname = "pybigwig";
+  version = "0.3.20";
+  format = "setuptools";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc";
+  disabled = pythonOlder "3.7";
+
+  src = fetchFromGitHub {
+    owner = "deeptools";
+    repo = "pyBigWig";
+    rev = "refs/tags/${version}";
+    hash = "sha256-uYKxM0HOG4fus5geBFjbfbv6G1kDvMaAwhk0w/e1YII=";
   };
 
-  buildInputs = [ zlib ];
+  buildInputs = [
+    zlib
+  ];
+
+  nativeCheckInputs = [
+    numpy
+    pytestCheckHook
+  ];
+
+  pythonImportsCheck = [
+    "pyBigWig"
+  ];
 
-  nativeCheckInputs = [ numpy pytest ];
+  pytestFlagsArray = [
+    "pyBigWigTest/test*.py"
+  ];
+
+  disabledTests = [
+    # Test file is donwloaded from GitHub
+    "testAll"
+    "testBigBed"
+    "testFoo"
+    "testNumpyValues"
+  ];
 
   meta = with lib; {
-    homepage = "https://github.com/deeptools/pyBigWig";
     description = "File access to bigBed files, and read and write access to bigWig files";
     longDescription = ''
-      A python extension, written in C, for quick access to bigBed files
+      A Python extension, written in C, for quick access to bigBed files
       and access to and creation of bigWig files. This extension uses
       libBigWig for local and remote file access.
     '';
+    homepage = "https://github.com/deeptools/pyBigWig";
+    changelog = "https://github.com/deeptools/pyBigWig/releases/tag/${version}";
     license = licenses.mit;
     maintainers = with maintainers; [ scalavision ];
   };