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Draft: Improvements in parser #71

Merged
merged 8 commits into from
Aug 12, 2024
Merged

Draft: Improvements in parser #71

merged 8 commits into from
Aug 12, 2024

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OndrejSladky
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@OndrejSladky OndrejSladky commented Aug 11, 2024 •
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Parser now uses kseq.h plus utilizes additional optimizations on the level of sequence parser, which brings:

  • Faster parsing
  • General support for gzipped files
  • Support for inputting from stdin.

@OndrejSladky OndrejSladky linked an issue Aug 11, 2024 that may be closed by this pull request
Add general support for parsing .gz files #44
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@OndrejSladky OndrejSladky linked an issue Aug 11, 2024 that may be closed by this pull request
The program cannot read from stdin #43
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@OndrejSladky OndrejSladky merged commit 21c262f into main Aug 12, 2024
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@OndrejSladky OndrejSladky deleted the parser-improvements branch August 12, 2024 21:52
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Add general support for parsing .gz files The program cannot read from stdin
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@OndrejSladky