Build(deps): Bump io.jenetics:jenetics from 7.2.0 to 8.1.0 in /cnf

[dependabot]

Bumps io.jenetics:jenetics from 7.2.0 to 8.1.0.

Release notes

Sourced from io.jenetics:jenetics's releases.

v8.1.0

Improvements

• #822: Improve the build script for generating combined Javadoc.
• #898: Add support for reading data from CSV files or strings. This simplifies the code for regression problems.

static List<Sample<Double>> parseDoubles(final CharSequence csv) {
	return CsvSupport.parseDoubles(csv).stream()
		.map(Sample::ofDouble)
		.toList();
}

• #904: Upgrade to Gradle 8.10 and cleanup of build scripts.
• #907: Add a chapter in the user's manual for optimization strategies: Practical Jenetics.
• #909: Helper methods for converting primitive arrays.

final Codec<int[], DoubleGene> codec = Codecs
    .ofVector(DoubleRange.of(0, 100), 100)
    .map(Conversions::doubleToIntArray);

Bugs

• #419: Fix flaky statistical tests.

v8.0.0

Improvements

• Java 21 is used for building and using the library.
• #878: Allow Virtual-Threads evaluating the fitness function. Must be enabled when creating an Engine (see code snippet below), the previous behaviour has been preserverd.

final Engine<DoubleGene, Double> engine = Engine.builder(ff)
	.fitnessExecutor(BatchExecutor.ofVirtualThreads())
	.build();

• #880: Replace code examples in Javadoc with JEP 413.
• #886: Improve CharStore sort.
• #894: New genetic operators: ShiftMutator, ShuffleMutator and UniformOrderBasedCrossover.
• #895: Improve default RandomGenerator selection. The used RandomGenerator is selected in the following order:
  1. Check if the io.jenetics.util.defaultRandomGenerator start parameter is set. If so, take this generator.
  2. Check if the L64X256MixRandom generator is available. If so, take this generator.
  3. Find the best available random generator according to the RandomGeneratorFactory.stateBits() value.
  4. Use the Random generator if no best generator can be found. This generator is guaranteed to be available on every platform.

Changelog

Sourced from io.jenetics:jenetics's changelog.

8.1.0

Improvements

• #822: Improve the build script for generating combined Javadoc.
• #898: Add support for reading data from CSV files or strings. This simplifies the code for regression problems.

static List<Sample<Double>> parseDoubles(final CharSequence csv) {
	return CsvSupport.parseDoubles(csv).stream()
		.map(Sample::ofDouble)
		.toList();
}

• #904: Upgrade to Gradle 8.10 and cleanup of build scripts.
• #907: Add a chapter in the user's manual for optimization strategies: Practical Jenetics.
• #909: Helper methods for converting primitive arrays.

final Codec<int[], DoubleGene> codec = Codecs
    .ofVector(DoubleRange.of(0, 100), 100)
    .map(Conversions::doubleToIntArray);

Bugs

• #419: Fix flaky statistical tests.

8.0.0

Improvements

• Java 21 is used for building and using the library.
• #878: Allow Virtual-Threads evaluating the fitness function.

final Engine<DoubleGene, Double> engine = Engine.builder(ff)
    .fitnessExecutor(BatchExecutor.ofVirtualThreads())
    .build();

• #880: Replace code examples in Javadoc with JEP 413.
• #886: Improve CharStore sort.
• #894: New genetic operators: ShiftMutator, ShuffleMutator and UniformOrderBasedCrossover.
• #895: Improve default RandomGenerator selection. The used RandomGenerator is selected in the following order:
  1. Check if the io.jenetics.util.defaultRandomGenerator start parameter is set. If so, take this generator.
  2. Check if the L64X256MixRandom generator is available. If so, take this generator.
  3. Find the best available random generator according to the RandomGeneratorFactory.stateBits() value.
  4. Use the Random generator if no best generator can be found. This generator is guaranteed to be available on every platform.

Commits

• 973a2f5 Fix maven publish.
• 2d416cf Exclude 'testFixtures' from being published.
• e52e85b Fix maven publish.
• de62ebf Correct links.
• eca8513 Improve Javadoc.
• 9c5ed43 Add version number.
• a3d30ff Update release notes.
• bef2568 Merge pull request #912 from jenetics/issues/JENETICS-907-problem_solving_sec...
• 8dd85f4 #907: Rename best practice doc file.
• 138d305 #907: Rename best practice doc file.
• Additional commits viewable in compare view

You can trigger a rebase of this PR by commenting @dependabot rebase.

---

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

• @dependabot rebase will rebase this PR
• @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
• @dependabot merge will merge this PR after your CI passes on it
• @dependabot squash and merge will squash and merge this PR after your CI passes on it
• @dependabot cancel merge will cancel a previously requested merge and block automerging
• @dependabot reopen will reopen this PR if it is closed
• @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
• @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
• @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
• @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
• @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

Note
Automatic rebases have been disabled on this pull request as it has been open for over 30 days.

[codecov]

Codecov Report

Attention: Patch coverage is 0% with 1 line in your changes missing coverage. Please review.

Additional details and impacted files

@@              Coverage Diff              @@
##             develop    #2795      +/-   ##
=============================================
- Coverage      56.63%   56.62%   -0.00%     
+ Complexity      9513     9512       -1     
=============================================
  Files           2253     2253              
  Lines          96074    96074              
  Branches        7095     7095              
=============================================
- Hits           54401    54397       -4     
- Misses         39666    39671       +5     
+ Partials        2007     2006       -1