Update readme & images

OpenSourceBrain · Oct 9, 2018 · e3a9607 · e3a9607
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Showing 6 changed files with 16 additions and 2 deletions.
diff --git a/.gitignore b/.gitignore
@@ -37,7 +37,6 @@
 /PyNN/clean.sh
 /PyNN/old*
 /PyNN/rates.png
-/PyNN/runall.sh
 /PyNN/*.pyc
 /PyNN/__pycache__
 *.gv.png
diff --git a/PyNN/README.md b/PyNN/README.md
@@ -2,7 +2,7 @@
 
 This version of the network can run in PyNN using simulator NEST
 
-To simulate activity (2000 cells total, with 0.75 of the inhibitory cells perturbed), and then plot result:
+To simulate the activity of 2000 cells (1600 excitatory in red, 400 inhibitory in blue with 0.75 of the inhibitory cells (darker blue) perturbed), and then plot result:
 
 ```
 python runNetwork.py nest .75 2000
@@ -20,5 +20,10 @@ python analysis_perturbation_pynn.py .1 2000
 
 ![0.1](test_0.1.png)
 
+The script [runall.sh](runall.sh) will run 40 simulations and plot the average of these:
+
+
+![40](rates.png)
+
 
 
diff --git a/PyNN/rates.png b/PyNN/rates.png
diff --git a/PyNN/runall.sh b/PyNN/runall.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+set -e
+for i in `seq 100 100 4000`;
+do
+    echo "==============================="
+    echo "Running with seed: "$i
+
+    python runNetwork.py nest .75 1000  $i &&  python3  analysis_perturbation_pynn.py .75 1000 -nogui -average -legend
+
+done 
diff --git a/PyNN/test_0.1.png b/PyNN/test_0.1.png
diff --git a/PyNN/test_0.75.png b/PyNN/test_0.75.png