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@PDB-REDO

PDB-REDO

Tools for macromolecular structure optimisation and analysis

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  1. dssp dssp Public

    Application to assign secondary structure to proteins

    C++ 176 19

  2. alphafill alphafill Public

    AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the mod…

    C++ 93 19

  3. libcifpp libcifpp Public

    Library containing code to manipulate mmCIF and PDB files

    C++ 31 13

  4. density-fitness density-fitness Public

    Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

    C++ 5

  5. tortoize tortoize Public

    Application to calculate ramachandran z-scores

    C++

  6. platonyzer platonyzer Public

    CMake

Repositories

Showing 10 of 17 repositories
  • cif-tools Public

    A suite of programs to manipulate and examine mmCIF files

    PDB-REDO/cif-tools’s past year of commit activity
    C++ 3 BSD-2-Clause 0 0 0 Updated Jan 22, 2025
  • platonyzer Public
    PDB-REDO/platonyzer’s past year of commit activity
    CMake 0 BSD-2-Clause 0 1 0 Updated Jan 22, 2025
  • dssp Public

    Application to assign secondary structure to proteins

    PDB-REDO/dssp’s past year of commit activity
    C++ 176 BSD-2-Clause 19 2 0 Updated Jan 22, 2025
  • tortoize Public

    Application to calculate ramachandran z-scores

    PDB-REDO/tortoize’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Jan 22, 2025
  • density-fitness Public

    Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

    PDB-REDO/density-fitness’s past year of commit activity
    C++ 5 BSD-2-Clause 0 0 0 Updated Jan 22, 2025
  • alphafill Public

    AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.

    PDB-REDO/alphafill’s past year of commit activity
    C++ 93 BSD-2-Clause 19 0 0 Updated Jan 21, 2025
  • fix-entry-id Public

    Application to change the entry_id of an mmCIF file

    PDB-REDO/fix-entry-id’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Jan 15, 2025
  • libcifpp Public

    Library containing code to manipulate mmCIF and PDB files

    PDB-REDO/libcifpp’s past year of commit activity
    C++ 31 BSD-2-Clause 13 1 2 Updated Jan 15, 2025
  • pdb-redo-session-manager Public

    A session manager for PDB-REDO

    PDB-REDO/pdb-redo-session-manager’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Jan 14, 2025
  • libpdb-redo Public

    Library containing shared code for various PDB-REDO programs

    PDB-REDO/libpdb-redo’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Dec 24, 2024
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