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additional columns to pmtct_infant_delivery #1

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merged 1 commit into from
Feb 7, 2022
Merged

additional columns to pmtct_infant_delivery #1

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27 changes: 25 additions & 2 deletions jobs/sql/extractions/pmtct_infant_delivery.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -17,8 +17,10 @@ eid_date_completed datetime,
mom_hiv_emr_id int,
mom_age_at_delivery int,
delivery_date date,
Delivery_with_partograph boolean,
delivery_with_partograph_obs int,
delivery_with_partograph boolean,
delivery_location_cat varchar(255),
maternity_clinic_type_obs int,
maternity_clinic_type varchar(255),
breastfeeding_status varchar(255),
hiv_rapid_test_obs int(11),
Expand All @@ -34,6 +36,7 @@ next_dispensing_date date,
is_LTFU boolean,
is_exposed boolean,
is_lab_specimen_rejected boolean,
health_facility_obs int,
health_facility varchar(255)
);

Expand Down Expand Up @@ -100,16 +103,36 @@ set next_dispensing_date = date(obs_value_datetime(latestEnc(patient_id, @hivDis
update temp_eid t
set is_LTFU = if(date_add(next_dispensing_date, interval 28 day) > CURRENT_DATE(),'0','1' );

-- delivery with partograph
update temp_eid t
set delivery_with_partograph_obs = latestObs(t.patient_id, concept_from_mapping('PIH','13964'), null);

update temp_eid t
set delivery_with_partograph = value_coded_as_boolean(delivery_with_partograph_obs);

-- maternity clinic type
update temp_eid t
set maternity_clinic_type_obs = latestObs(t.patient_id, concept_from_mapping('CIEL', '164851'), null);
update temp_eid t
set maternity_clinic_type = (select concept_name(value_coded, 'en') from obs where voided = 0 and obs_id = t.maternity_clinic_type_obs);

update temp_eid t
set health_facility_obs = latestObs(t.patient_id, concept_from_mapping('CIEL', '163529'), null);
update temp_eid t
set health_facility = (select location_name(value_text) from obs where voided = 0 and obs_id = t.health_facility_obs);


select
patient_id,
zlemr(patient_id),
infant_age_in_months,
age_cat_infant,
eid_date_enrolled,
eid_date_completed,
mom_hiv_emr_id,
mom_age_at_delivery,
delivery_date,
Delivery_with_partograph,
delivery_with_partograph,
delivery_location_cat,
maternity_clinic_type,
breastfeeding_status,
Expand Down
1 change: 1 addition & 0 deletions jobs/sql/schemas/pmtct_infant_delivery.sql
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
CREATE TABLE pmtct_infant_delivery
(
patient_id int,
emr_id varchar(25),
infant_age_in_months int,
age_cat_infant varchar(50),
eid_date_enrolled datetime,
Expand Down