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protobuf与glog一些引用找不到 #1175

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gucasbrg opened this issue Jan 17, 2017 · 9 comments
Closed

protobuf与glog一些引用找不到 #1175

gucasbrg opened this issue Jan 17, 2017 · 9 comments
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@gangliao

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@gucasbrg
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gucasbrg commented Jan 17, 2017 •
edited by reyoung
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按 https://github.com/PaddlePaddle/Paddle/blob/develop/doc/getstarted/build_and_install/build_from_source_en.md 安装，出现以下错误：

Done processing test_FPException.cpp
Total errors found: 0
../../gserver/libpaddle_gserver.a(WarpCTCLayer.cpp.o): In function std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<unsigned long, unsigned long>(unsigned long const&, unsigned long const&, char const*)': /software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to_ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev'
../../gserver/libpaddle_gserver.a(ValidationLayer.cpp.o): In function SetNoArena': /software/Paddle/third_party/install/protobuf/include/google/protobuf/arenastring.h:210: undefined reference to_ZN6google8protobuf8internal26fixed_address_empty_stringB5cxx11E'
/software/Paddle/third_party/install/protobuf/include/google/protobuf/arenastring.h:210: undefined reference to _ZN6google8protobuf8internal26fixed_address_empty_stringB5cxx11E' ../../gserver/libpaddle_gserver.a(TransLayer.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<int, int>(int const&, int const&, char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(SumToOneNormLayer.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<unsigned long, unsigned int>(unsigned long const&, unsigned int const&, char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(SumToOneNormLayer.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<float, double>(float const&, double const&, char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(SubSequenceLayer.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<bool, bool>(bool const&, bool const&, char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(SubSequenceLayer.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<unsigned int, unsigned long>(unsigned int const&, unsigned long const&, char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(SubSequenceLayer.cpp.o):/software/Paddle/third_party/install/glog/include/glog/logging.h:689: more undefined references to_ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' follow
../../gserver/libpaddle_gserver.a(SpatialPyramidPoolLayer.cpp.o): In function SetNoArena': /software/Paddle/third_party/install/protobuf/include/google/protobuf/arenastring.h:210: undefined reference to_ZN6google8protobuf8internal26fixed_address_empty_stringB5cxx11E'
/software/Paddle/third_party/install/protobuf/include/google/protobuf/arenastring.h:210: undefined reference to _ZN6google8protobuf8internal26fixed_address_empty_stringB5cxx11E' ../../gserver/libpaddle_gserver.a(LinearChainCRF.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<float, int>(float const&, int const&, char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(Layer.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<std::__cxx11::basic_string<char, std::char_traits, std::allocator >, char [8]>(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&, char const (&) [8], char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(GetOutputLayer.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<std::__cxx11::basic_string<char, std::char_traits, std::allocator >, char [1]>(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&, char const (&) [1], char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(ExpandLayer.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<bool, unsigned long>(bool const&, unsigned long const&, char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(ExpandLayer.cpp.o): In functionstd::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<long, long>(long const&, long const&, char const*)':
/software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to _ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' ../../gserver/libpaddle_gserver.a(ConvOperator.cpp.o):/software/Paddle/third_party/install/glog/include/glog/logging.h:689: more undefined references to_ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev' follow
../../gserver/libpaddle_gserver.a(RecurrentGradientMachine.cpp.o): In function SetNoArena': /software/Paddle/third_party/install/protobuf/include/google/protobuf/arenastring.h:210: undefined reference to_ZN6google8protobuf8internal26fixed_address_empty_stringB5cxx11E'
../../gserver/libpaddle_gserver.a(RecurrentGradientMachine.cpp.o): In function std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<long, int>(long const&, int const&, char const*)': /software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to_ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev'
../../gserver/libpaddle_gserver.a(MultiNetwork.cpp.o): In function std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<char [5], std::__cxx11::basic_string<char, std::char_traits, std::allocator > >(char const (&) [5], std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&, char const*)': /software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to_ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev'
../../gserver/libpaddle_gserver.a(MultiGradientMachine.cpp.o): In function std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<paddle::enumeration_wrapper::ParameterType, paddle::enumeration_wrapper::ParameterType>(paddle::enumeration_wrapper::ParameterType const&, paddle::enumeration_wrapper::ParameterType const&, char const*)': /software/Paddle/third_party/install/glog/include/glog/logging.h:689: undefined reference to_ZN6google4base21CheckOpMessageBuilder9NewStringB5cxx11Ev'
../../gserver/libpaddle_gserver.a(GradientMachine.cpp.o): In function paddle::GradientMachine::create(std::istream&, paddle::TrainerConfig*)': /software/Paddle/paddle/gserver/gradientmachines/GradientMachine.cpp:95: undefined reference togoogle::protobuf::MessageLite::ParseFromString(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)'
../../gserver/libpaddle_gserver.a(PyDataProvider.cpp.o): In function `std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<char*, char const*>(char* const&, char const* const&, char const*)':

另外CMakeFiles/openblas.dir/build.make 中
/usr/bin/gmake FC=/usr/bin/gfortran CC=/usr/local/bin/gcc HOSTCC=/usr/local/bin/gcc NO_SHARED=1 BINARY=64 U
SE_THREADS=1 NUM_THREADS=8 TARGET=SANDYBRIDGE libs netlib
如果不加另外的参数，openBLAS貌似也编译不过去
@gangliao
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@gucasbrg 请问你用的什么系统, 什么版本

@gangliao gangliao self-assigned this Jan 17, 2017
@gucasbrg
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gucasbrg commented Jan 18, 2017 •
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CentOS 6.8
gcc5.2
Python 2.7.10
无GPU编译
cmake .. -DWITH_GPU=OFF

@gangliao
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gangliao commented Jan 18, 2017 •
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@gucasbrg
能否帮我确认一下/software/Paddle/third_party/install/glog和/software/Paddle/third_party/install/protobuf的静态库是lib还是lib64目录 @gucasbrg

看样子是没有链接到

@gucasbrg
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gucasbrg commented Jan 18, 2017 •
edited
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@gangliao
in this path:/software/Paddle/third_party/install/
gflags\glog\gtest\openblas\warpctc\zlib:lib
protobuf:lib64

@gangliao
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@gucasbrg 谢谢 我找一个docker centos 6.8试一下

@reyoung
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reyoung commented Jan 18, 2017

BTW, CentOS 6 为什么是gcc 5.2呢？@gucasbrg 纯粹好奇。。应该还用了repl之类的源吧？

@gucasbrg
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@reyoung 因为跑别的框架的缘故，自己重新装的高版本的gcc

@gucasbrg
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gucasbrg commented Jan 18, 2017 •
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用scl enable devtoolset-4 -- make DYNAMIC_ARCH=1验证
貌似是GCC5中cxx11的问题
CMakeFiles/test_ThreadBarrier.dir/test_ThreadBarrier.cpp.o：在函数‘std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<unsigned long, unsigned long>(unsigned long const&, unsigned long const&, char const*)’中：
/software/Paddle/third_party/install/glog/include/glog/logging.h:689：对‘google::base::CheckOpMessageBuilder::NewStringabi:cxx11’未定义的引用
../../gserver/libpaddle_gserver.a(ValidationLayer.cpp.o)：在函数‘google::protobuf::internal::ArenaStringPtr::SetNoArena(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const*, std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)’中：
/software/Paddle/third_party/install/protobuf/include/google/protobuf/arenastring.h:210：对‘google::protobuf::internal::fixed_address_empty_string[abi:cxx11]’未定义的引用
/software/Paddle/third_party/install/protobuf/include/google/protobuf/arenastring.h:210：对‘google::protobuf::internal::fixed_address_empty_string[abi:cxx11]’未定义的引用
../../gserver/libpaddle_gserver.a(TransLayer.cpp.o)：在函数‘std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<int, int>(int const&, int const&, char const*)’中：
/software/Paddle/third_party/install/glog/include/glog/logging.h:689：对‘google::base::CheckOpMessageBuilder::NewStringabi:cxx11’未定义的引用
../../gserver/libpaddle_gserver.a(SumToOneNormLayer.cpp.o)：在函数‘std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<unsigned long, unsigned int>(unsigned long const&, unsigned int const&, char const*)’中：
/software/Paddle/third_party/install/glog/include/glog/logging.h:689：对‘google::base::CheckOpMessageBuilder::NewStringabi:cxx11’未定义的引用
../../gserver/libpaddle_gserver.a(SumToOneNormLayer.cpp.o)：在函数‘std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<float, double>(float const&, double const&, char const*)’中：
/software/Paddle/third_party/install/glog/include/glog/logging.h:689：对‘google::base::CheckOpMessageBuilder::NewStringabi:cxx11’未定义的引用
../../gserver/libpaddle_gserver.a(SubSequenceLayer.cpp.o)：在函数‘std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<bool, bool>(bool const&, bool const&, char const*)’中：
/software/Paddle/third_party/install/glog/include/glog/logging.h:689：对‘google::base::CheckOpMessageBuilder::NewStringabi:cxx11’未定义的引用
../../gserver/libpaddle_gserver.a(SubSequenceLayer.cpp.o)：在函数‘std::__cxx11::basic_string<char, std::char_traits, std::allocator >* google::MakeCheckOpString<unsigned int, unsigned long>(unsigned int const&, unsigned long const&, char const*)’中：
/software/Paddle/third_party/install/glog/include/glog/logging.h:689：对‘google::base::CheckOpMessageBuilder::NewStringabi:cxx11’未定义的引用
../../gserver/libpaddle_gserver.a(SubSequenceLayer.cpp.o):/software/Paddle/third_party/install/glog/include/glog/logging.h:689: more undefined references to `google::base::CheckOpMessageBuilder::NewStringabi:cxx11' follow
../../gserver/libpaddle_gserver.a(SpatialPyramidPoolLayer.cpp.o)：在函数‘google::protobuf::internal::ArenaStringPtr::SetNoArena(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const*, std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)’中：
/software/Paddle/third_party/install/protobuf/include/google/protobuf/arenastring.h:210：对‘google::protobuf::internal::fixed_address_empty_string[abi:cxx11]’未定义的引用
/software/Paddle/third_party/install/protobuf/include/google/protobuf/arenastring.h:210：对‘google::protobuf::internal::fixed_address_empty_string[abi:cxx11]’未定义的引用

@gangliao
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@gucasbrg
明白了. 你也可以尝试docker，其支持最新的code

https://github.com/PaddlePaddle/Paddle/blob/develop/doc/getstarted/build_and_install/docker_install_en.rst

zhhsplendid pushed a commit to zhhsplendid/Paddle that referenced this issue Sep 25, 2019
@Aurelius84
improve seq_pool api cn doc (PaddlePaddle#1175)
8a8b773 
* improve seq_pool api cn doc test=document_preview

* refine sequence last and first pool doc test=document_preview

* refine sequence_pool dataType test=document_preview

* fix input dtype

* add dataType

* fix datatype
lizexu123 pushed a commit to lizexu123/Paddle that referenced this issue Feb 23, 2024
@wanghaoshuang
Make ACT support inputs with implicit dimensions (PaddlePaddle#1175)
6fa4ff1
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