elmbeech::pytest pcdl library on linux os; all python3 versions. #7
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| # This workflow will install Python dependencies, run tests and lint | |
| # with a variety of Python versions. For more information see: | |
| #https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: linux_pcdl_unitests | |
| run-name: ${{ github.actor }}::pytest pcdl library on linux os; all python3 versions. | |
| on: | |
| push: | |
| branches: ["master", "v3", "v4"] | |
| pull_request: | |
| branches: ["master", "v3", "v4"] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| #python-version: ["3.12"] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| env: | |
| PYTHONPATH: /home/runner/work/physicelldataloader/physicelldataloader:/home/runner/work/python-loader/python-loader | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: set up python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: install dependencies | |
| run: | | |
| sudo apt install ffmpeg imagemagick | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 pytest aicsimageio anndata matplotlib numpy pandas requests scipy vtk | |
| python -m pip install /home/runner/work/physicelldataloader/physicelldataloader -v | |
| #if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: test with pytest | |
| run: | | |
| pytest |