Jupyterlab Polus Render 1.0.0 (#44)

---------

Co-authored-by: Konstantin Taletskiy <[email protected]>

jupyterlab_polus_render/.eslintignore

@@ -0,0 +1,5 @@
+node_modules
+dist
+coverage
+**/*.d.ts
+tests

jupyterlab_polus_render/.eslintrc.js

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+module.exports = {
+  extends: [
+    'eslint:recommended',
+    'plugin:@typescript-eslint/eslint-recommended',
+    'plugin:@typescript-eslint/recommended',
+    'plugin:prettier/recommended'
+  ],
+  parser: '@typescript-eslint/parser',
+  parserOptions: {
+    project: 'tsconfig.eslint.json',
+    sourceType: 'module'
+  },
+  plugins: ['@typescript-eslint'],
+  rules: {
+    '@typescript-eslint/no-unused-vars': ['warn', { args: 'none' }],
+    '@typescript-eslint/no-explicit-any': 'off',
+    '@typescript-eslint/no-namespace': 'off',
+    '@typescript-eslint/no-use-before-define': 'off',
+    '@typescript-eslint/quotes': [
+      'error',
+      'single',
+      { avoidEscape: true, allowTemplateLiterals: false }
+    ],
+    curly: ['error', 'all'],
+    eqeqeq: 'error',
+    'prefer-arrow-callback': 'error'
+  }
+};

jupyterlab_polus_render/.github/workflows/build.yml

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+  name: Build
+
+  on:
+    push:
+      branches: main
+    pull_request:
+      branches: "*"
+
+  jobs:
+    build:
+      runs-on: ${{ matrix.os }}
+      strategy:
+        fail-fast: false
+        matrix:
+          os: [ubuntu-latest, windows-latest, macos-latest]
+          python-version: ["3.8", "3.9", "3.10", "3.11"]
+      steps:
+        - name: Checkout
+          uses: actions/checkout@v2
+
+        - uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1
+
+        - name: Install dependencies
+          run: |
+            python -m pip install -U codecov
+            npm install -g codecov
+        - name: Test the compilation of extension
+          run: |
+            python -m pip install --upgrade -v -e ".[test, examples, docs]"
+            python -c "import jupyterlab_polus_render"
+            yarn run test
+
+        - name: Linting
+          if: ${{ matrix.os == 'ubuntu-latest' }}
+          run: |
+            yarn run lint:check
+
+        - name: Check docs can be build + links
+          if: ${{ matrix.os == 'ubuntu-latest' }}
+          working-directory: docs
+          run: |
+            sudo apt install -y pandoc
+            make html

jupyterlab_polus_render/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+.yarn
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*,cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+
+# Flask instance folder
+instance/
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+docs/source/_static/embed-bundle.js
+docs/source/_static/embed-bundle.js.map
+docs/source/_static/embed-bundle.js.LICENSE.txt
+
+# PyBuilder
+target/
+
+# IPython Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# dotenv
+.env
+
+# virtualenv
+venv/
+ENV/
+
+# Spyder project settings
+.spyderproject
+
+# Rope project settings
+.ropeproject
+
+# =========================
+# Operating System Files
+# =========================
+
+# OSX
+# =========================
+
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# Thumbnails
+._*
+
+# Files that might appear in the root of a volume
+.DocumentRevisions-V100
+.fseventsd
+.Spotlight-V100
+.TemporaryItems
+.Trashes
+.VolumeIcon.icns
+
+# Directories potentially created on remote AFP share
+.AppleDB
+.AppleDesktop
+Network Trash Folder
+Temporary Items
+.apdisk
+
+# Windows
+# =========================
+
+# Windows image file caches
+Thumbs.db
+ehthumbs.db
+
+# Folder config file
+Desktop.ini
+
+# Recycle Bin used on file shares
+$RECYCLE.BIN/
+
+# Windows Installer files
+*.cab
+*.msi
+*.msm
+*.msp
+
+# Windows shortcuts
+*.lnk
+
+
+# NPM
+# ----
+
+**/node_modules/
+jupyterlab_polus_render/nbextension/index.*
+
+# Coverage data
+# -------------
+**/coverage/
+
+# Packed lab extensions
+jupyterlab_polus_render/labextension
+
+
+# Files used for Render
+*.tif
+*.ome.tif
+**/pyramid.zarr/

jupyterlab_polus_render/.npmignore

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+.DS_Store
+node_modules/
+tests/
+.jshintrc
+# Ignore any build output from python:
+dist/*.tar.gz
+dist/*.wheel

jupyterlab_polus_render/.prettierignore

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+node_modules
+**/node_modules
+**/lib
+**/package.json

jupyterlab_polus_render/.prettierrc

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+{
+    "singleQuote": true
+}

jupyterlab_polus_render/.yarnrc.yml

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+nodeLinker: node-modules

jupyterlab_polus_render/render-server-ext/LICENSE → jupyterlab_polus_render/LICENSE.txt

@@ -1,6 +1,6 @@
 The MIT License (MIT)
 
-Copyright (c) 2023 LabShare
+Copyright (c) 2024 PolusAI
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

jupyterlab_polus_render/MANIFEST.in

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+include LICENSE.txt
+include README.md
+
+include setup.py
+include pyproject.toml
+include pytest.ini
+include .coverage.rc
+
+include tsconfig.json
+include package.json
+include webpack.config.js
+include jupyterlab_polus_render/labextension/*.tgz
+
+# Documentation
+graft docs
+exclude docs/\#*
+prune docs/build
+prune docs/gh-pages
+prune docs/dist
+
+# Examples
+graft examples
+
+# Tests
+graft tests
+prune tests/build
+
+# Javascript files
+graft jupyterlab_polus_render/nbextension
+graft src
+graft css
+prune **/node_modules
+prune coverage
+prune lib
+
+# Patterns to exclude from any directory
+global-exclude *~
+global-exclude *.pyc
+global-exclude *.pyo
+global-exclude .git
+global-exclude .ipynb_checkpoints