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POL3837 Polus-style file patterns in 3D #193

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sameeul merged 1 commit into PolusAI:main from friskluft:POL3837_polus_fpattern_support

Jan 23, 2024

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friskluft commented Jan 22, 2024 •

edited

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Selector {set d+} treats the corresponding numbers as Z-indices.

Example:

from nyxus import Nyxus3D 
n = Nyxus3D(["*3D_ALL*"]) 
F = n.featurize_directory (intensity_dir="path/to/dataset/int", label_dir="path/to/dataset/seg", file_pattern="BRATS_{d+}_z{set d+}_t{d+}.ome.tif")

to extract features from files BRATS_001_z001_t002.ome.tif, BRATS_001_z002_t002.ome.tif, ..., BRATS_001_z154_t002.ome.tif


          polus-style file patterns

75acac2

sameeul merged commit 0ace25f into PolusAI:main

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