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update HPC page #173

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merged 3 commits into from
Nov 5, 2022
Merged

update HPC page #173

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cae8376
update HPC page
TimSlendebroek Nov 3, 2022
5b9c478
documentation for setting up HPC
TimSlendebroek Nov 3, 2022
1258a51
Update docs/src/install.md
orso82 Nov 5, 2022
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6 changes: 5 additions & 1 deletion docs/src/install.md
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Expand Up @@ -17,6 +17,10 @@ We highly recommend using the [Juliaup](https://github.com/JuliaLang/juliaup) ma
!!! note
To clone the FUSE repository you will need to [setup your public key on git GitHub](https://docs.github.com/en/authentication/connecting-to-github-with-ssh/adding-a-new-ssh-key-to-your-github-account)

!!! note
if you are installing from an old install and the package update isn't able to resolve itself feel free to remove every folder except the dev folder in your .julia folder
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!!! tip
1. Add FUSE and its dependencies to the julia environment (this may take a few minutes):

```bash
Expand Down Expand Up @@ -55,4 +59,4 @@ We highly recommend using the [Juliaup](https://github.com/JuliaLang/juliaup) ma

```bash
jupyter-lab
```
```
8 changes: 7 additions & 1 deletion docs/src/parallel.md
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Expand Up @@ -14,11 +14,15 @@ addprocs(SlurmManager(np-nprocs()+1), partition="preemptable", ntasks_per_core=1
## Parallel Jupyter on Saga cluster

On `cybele` via NoMachine connect to `saga`

```
jupyter lab --no-browser --port 55667
```

On your computer setup your `~/.ssh.config` this way:
Copy the token that you see on this session it should look something like ```token=1f1e0259cbc1..................```


On your computer setup your `~/.ssh/config` this way:
```
Host cybele cybele.gat.com
Hostname cybele.gat.com
Expand All @@ -36,6 +40,8 @@ and start a tunnel going through `cybele` to `saga` (keep this open)
ssh -N -L localhost:33445:localhost:55667 sagae
```

Use the token that you coppied from your nomachine session and use it in the http://localhost:33445 login page

Now, on your computer open a web browser tab to `localhost:33445` to connect to the Jupyter-lab session on `saga`.

And finally, in this interactive Jupyter-lab one can use `saga` nodes with:
Expand Down