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Changes to analysis paths
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@towsey
towsey committed Jun 6, 2018
1 parent 4bbbc75 commit e7e278d
Showing 1 changed file with 44 additions and 19 deletions.
63 changes: 44 additions & 19 deletions src/AnalysisPrograms/Sandpit.cs
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Original file line number Diff line number Diff line change
Expand Up @@ -68,9 +68,9 @@ public override Task<int> Execute(CommandLineApplication app)
//Audio2CsvOverMultipleFiles();

// used to get files from availae for Black rail and Least Bittern papers.
CodeToExtractFeatureVectorOfIndices();
//CodeToExtractFeatureVectorOfIndices();
//CodeToGetLdfcSpectrogramsFromAvailae();
//CodeToPlaceScoreTracksUnderLdfcSpectrograms();
CodeToPlaceScoreTracksUnderLdfcSpectrograms();
//CodeToPlaceScoreTracksUnderSingleImage();

//ConcatenateIndexFilesAndSpectrograms();
Expand Down Expand Up @@ -2116,17 +2116,26 @@ public static void CodeToDrawClusterImage()
/// </summary>
public static void CodeToGetLdfcSpectrogramsFromAvailae()
{
// Lewin's Rail
//var sourceDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\Original concatenated index files ARU10");
//var sourceDir = new DirectoryInfo(superDir + @"\David Watson_Liz_Tasmania_ARU10\ARU 10 27.12.2016 Data");

string superDir = @"Y:\Results\2017Apr13-135831 - Liz, Towsey.Indices, ICD=60.0, #154\ConcatResults";

// Black Rail
//string superDir = @"Y:\Results\2017Apr13-135831 - Liz, Towsey.Indices, ICD=60.0, #154\ConcatResults";
//var sourceDir = new DirectoryInfo(superDir + @"\David Watson_Liz_USA - South Carolina_ARU UNIT 7");
var sourceDir = new DirectoryInfo(superDir + @"\David Watson_Liz_USA - South Carolina_ARU UNIT 10");
string searchPattern = "2016*";

var outputDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\BlackRail\UnlabelledDataSets\Job154_2017Apr13_135831 SouthCarolina\ARU10_spectrograms");
//var sourceDir = new DirectoryInfo(superDir + @"\David Watson_Liz_USA - South Carolina_ARU UNIT 10");
//var outputDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\BlackRail\UnlabelledDataSets\Job154_2017Apr13_135831 SouthCarolina\ARU10_spectrograms");
//var outputDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\BlackRail\UnlabelledDataSets\Job154_2017Apr13_135831 SouthCarolina\ARU7_spectrograms");
//string searchPattern = "2016*";

// Least Bittern
string superDir = @"Y:\Results\2017Jun26-111643- Liz, Towsey.Indices, ICD=60.0, #160\ConcatResults2\David Watson_Liz_Oak Ridge";
//var sourceDir = new DirectoryInfo(superDir + @"\ORNL ARU 2 6.6.2017 Powerhouse trail Data");
//var sourceDir = new DirectoryInfo(superDir + @"\ORNL ARU 2 17.5.2017 Data");
var sourceDir = new DirectoryInfo(superDir + @"\ORNL ARU 2 28.5.2017");
var outputDir = new DirectoryInfo(@"G:\SensorNetworks\Collaborations\LizZnidersic\LeastBittern\ARU2_ORNL_2017_LEBI_LZ_Spectrograms");
string searchPattern = "20170*";

if (!outputDir.Exists)
{
outputDir.Create();
Expand Down Expand Up @@ -2181,10 +2190,16 @@ public static void CodeToPlaceScoreTracksUnderSingleImage()
/// </summary>
public static void CodeToPlaceScoreTracksUnderLdfcSpectrograms()
{
var scoreDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\BlackRail\UnlabelledDataSets\Job154_2017Apr13_135831 SouthCarolina\ARU7_predictions");
var imageDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\BlackRail\UnlabelledDataSets\Job154_2017Apr13_135831 SouthCarolina\ARU7_spectrograms");
// Black rail directories
//var scoreDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\BlackRail\UnlabelledDataSets\Job154_2017Apr13_135831 SouthCarolina\ARU7_predictions");
//var imageDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\BlackRail\UnlabelledDataSets\Job154_2017Apr13_135831 SouthCarolina\ARU7_spectrograms");
//var outputDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\BlackRail\UnlabelledDataSets\Job154_2017Apr13_135831 SouthCarolina\ARU7_spectrogramsWithScores");

// Least Bittern directories
var scoreDir = new DirectoryInfo(@"G:\SensorNetworks\Collaborations\LizZnidersic\LeastBittern\UnlabelledDataSets_Job160_predictions");
var imageDir = new DirectoryInfo(@"G:\SensorNetworks\Collaborations\LizZnidersic\LeastBittern\ARU2_ORNL_2017_LEBI_LZ_Spectrograms");
var outputDir = new DirectoryInfo(@"G:\SensorNetworks\Collaborations\LizZnidersic\LeastBittern\ARU2_ORNL_2017_LEBI_LZ_SpectrogramsWithScores");

var outputDir = new DirectoryInfo(@"C:\SensorNetworks\Collaborations\LizZnidersic\BlackRail\UnlabelledDataSets\Job154_2017Apr13_135831 SouthCarolina\ARU7_spectrogramsWithScores");
if (!outputDir.Exists)
{
outputDir.Create();
Expand All @@ -2200,7 +2215,7 @@ public static void CodeToPlaceScoreTracksUnderLdfcSpectrograms()
// assume this file exists
string site = spImageFile.Name.Split('_')[0];
string date = spImageFile.Name.Split('_')[1];
string scoreFileName = site + "_" + date + "_FeatureSet.csv";
string scoreFileName = site + "_" + date + "_FeatureSet3.csv";

// get the corresponding csv file of scores
var scoreFile = new FileInfo(Path.Combine(scoreDir.FullName, scoreFileName));
Expand All @@ -2221,7 +2236,8 @@ public static void CodeToPlaceScoreTrackUnderImageFile(FileInfo imageFile, FileI
var data = CsvTools.ReadColumnOfCsvFile(scoreFile.FullName, 1, out string header);

// create a score track
var scoreTrack = ImageTrack.GetNamedScoreTrack(data, scoreMin: 0.0, scoreMax: 15.0, scoreThreshold: threshold, name: "Predictions");
string name = "Predictions (max=" + maxScore + ")";
var scoreTrack = ImageTrack.GetNamedScoreTrack(data, scoreMin: 0.0, scoreMax: maxScore, scoreThreshold: threshold, name: name);

// attach score track to the LDFC spectrogram
var scoreImage = new Bitmap(spectrogram.Width, 40);
Expand Down Expand Up @@ -2261,11 +2277,19 @@ public static void CodeToExtractFeatureVectorOfIndices()
*/

// THESE ARE PATHS FOR LEAST BITTERN PROJECT
string superDir = @"Y:\Results\2017Jun26-111643- Liz, Towsey.Indices, ICD=60.0, #160\ConcatResults";
var sourceDir = new DirectoryInfo(superDir + @"\David Watson_Liz_Oak Ridge\ORNL ARU 2 6.6.2017 Powerhouse trail Data");
string searchPattern = "201706*";
// data on Y drive
//string superDir = @"Y:\Results\2017Jun26-111643- Liz, Towsey.Indices, ICD=60.0, #160\ConcatResults";
//var sourceDir = new DirectoryInfo(superDir + @"\David Watson_Liz_Oak Ridge\ORNL ARU 2 6.6.2017 Powerhouse trail Data");

// data from G drive
string superDir = @"G:\SensorNetworks\Collaborations\LizZnidersic\LeastBittern\OriginalResultsData";
//var sourceDir = new DirectoryInfo(superDir + @"\ORNL ARU 2 6.6.2017 Powerhouse trail Data");
//var sourceDir = new DirectoryInfo(superDir + @"\ORNL ARU 2 17.5.2017 Data");
var sourceDir = new DirectoryInfo(superDir + @"\ORNL ARU 2 6.6.2017 Powerhouse trail Data");

var outputDir = new DirectoryInfo(@"G:\SensorNetworks\Collaborations\LizZnidersic\LeastBittern\UnlabelledDataSets");
string searchPattern = "20170*";

var outputDir = new DirectoryInfo(@"G:\SensorNetworks\Collaborations\LizZnidersic\LeastBittern\UnlabelledDataSets_Job160");

if (!outputDir.Exists)
{
Expand Down Expand Up @@ -2305,9 +2329,10 @@ public static void ExtractFeatureVectorOfIndices(DirectoryInfo sourceDir, string
*/

// LEAST BITTERN
string[] indexCodes = { "ACI", "ENT", "EVN", "R3D" };
//string[] indexCodes = { "ACI", "ENT", "EVN", "R3D" };
string[] indexCodes = { "ACI", "ENT", "EVN" };
int startBin = 12;
int endbin = 21;
int endbin = 18;

int indexCount = indexCodes.Length;
int length = endbin - startBin + 1;
Expand Down

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