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Retrain BioMegatron using MedMentions with the new NodeNorm #16

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gaurav opened this issue Sep 22, 2022 · 1 comment
Open

Retrain BioMegatron using MedMentions with the new NodeNorm #16

gaurav opened this issue Sep 22, 2022 · 1 comment
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@gaurav
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gaurav commented Sep 22, 2022

The new NodeNorm provides better information on identifiers in MedMentions, so retraining BioMegatron with these new identifiers and Biolink types might help BioMegatron make better type determinations.

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gaurav commented Sep 27, 2022

Chris suggested to me today that distinguishing between genes and proteins might be confusing for BioMegatron, since they are often used in similar contexts. At some point, we should try training BioMegatron without distinguishing between genes and proteins and see if that improves its accuracy (assuming it's needed after training it on the new NodeNorm).

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