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@RENCI-NER

RENCI Named Entity Recognition (NER) Working Group

Biomedical entity recognition endeavour at @RENCI

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  1. sapbert sapbert Public

    Forked from cambridgeltl/sapbert

    [NAACL & ACL 2021] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.

    Python 1

  2. medtype-benchmarks medtype-benchmarks Public

    Benchmarks for the MedType NER tool

    Python

  3. nemo-ner nemo-ner Public

    Training models for NER with Nemo tookit

    Python

  4. PubMedDS2BIO PubMedDS2BIO Public

    Converts pubmed ds json format to IOB format

    Python

  5. Helm-charts Helm-charts Public

    Helm charts repo for NER deployments

    Smarty

  6. nemo-serve nemo-serve Public

    Web server for serving trained NER models using Nemo

    Python

Repositories

Showing 10 of 11 repositories
  • Bagel Public Forked from cbizon/Bagel
    RENCI-NER/Bagel’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Nov 19, 2024
  • nemo-serve Public

    Web server for serving trained NER models using Nemo

    RENCI-NER/nemo-serve’s past year of commit activity
    Python 0 Apache-2.0 0 13 3 Updated Sep 25, 2024
  • PubtatorToJSON Public

    Conversion of data in Pubtator format (e.g., MedMentions data) into JSON format as a benchmarking dataset for validating Bagel NER performance.

    RENCI-NER/PubtatorToJSON’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 31, 2024
  • benchmarks Public

    Benchmarks and results in comparing between NER engines

    RENCI-NER/benchmarks’s past year of commit activity
    Python 0 MIT 0 6 1 Updated Aug 30, 2024
  • Helm-charts Public

    Helm charts repo for NER deployments

    RENCI-NER/Helm-charts’s past year of commit activity
    Smarty 0 0 0 0 Updated Apr 27, 2024
  • sapbert Public Forked from cambridgeltl/sapbert

    [NAACL & ACL 2021] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.

    RENCI-NER/sapbert’s past year of commit activity
    Python 0 MIT 35 5 0 Updated Apr 26, 2024
  • ontorunner Public Forked from monarch-initiative/ontorunner
    RENCI-NER/ontorunner’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 2 0 0 Updated Jul 10, 2022
  • oger-benchmarks Public

    An instance of OGER that we can benchmark

    RENCI-NER/oger-benchmarks’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Jun 26, 2022
  • medtype-benchmarks Public

    Benchmarks for the MedType NER tool

    RENCI-NER/medtype-benchmarks’s past year of commit activity
    Python 0 0 0 1 Updated May 17, 2022
  • nemo-ner Public

    Training models for NER with Nemo tookit

    RENCI-NER/nemo-ner’s past year of commit activity
    Python 0 0 0 0 Updated Apr 29, 2022
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