Merge pull request #97 from RIVM-bioinformatics/containers #1
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| name: Publish containers | |
| #todo: change this to an onrelease trigger | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| jobs: | |
| Upload: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download artifact | |
| id: download-artifact | |
| uses: dawidd6/action-download-artifact@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| workflow: build_and_test.yml | |
| name: built_containers | |
| skip_unpack: true | |
| - name: move artifact | |
| run: | | |
| mv ./containers.tar.gz ./containers/containers.tar.gz | |
| - name: list directory contents | |
| run: | | |
| ls -R ./ | |
| - name: unzip built containers | |
| run: | | |
| cd ./containers/ | |
| tar -xzvf containers.tar.gz | |
| cd .. | |
| - name: Setup Mamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| environment-file: env.yml | |
| init-shell: bash | |
| - name: Install local python package | |
| run: | | |
| pip install . --no-deps | |
| shell: micromamba-shell {0} | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Add artifacted containers to docker daemon | |
| run: | | |
| python containers/add_OCI_to_docker_engine.py | |
| shell: micromamba-shell {0} | |
| - name: tag and push containers | |
| run: | | |
| python containers/tag_and_push_containers.py | |
| shell: micromamba-shell {0} |