looking for problem in ARAX_database_manager #1914

RTXteam · May 31, 2023 · e035821 · e035821
1 parent bd857ea
commit e035821
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Showing 2 changed files with 6 additions and 4 deletions.
diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
@@ -40,10 +40,10 @@ jobs:
         echo "http://localhost:5008/api/rtxkg2/v1.4" > /mnt/config/kg2_url_override.txt
 
     # - name: Append code dir to GITHUB_PATH                # Causing RTXConfiguration import error
-    #   run: echo "$HOME/RTX" >> $GITHUB_PATH
+    #   run: echo $GITHUB_PATH
 
-    # - name: Download databases as needed
-    #   run: python3 code/ARAX/ARAXQuery/ARAX_database_manager.py --mnt --skip-if-exists --remove_unused
+    - name: Download databases as needed
+      run: python3 $HOME/RTX/code/ARAX/ARAXQuery/ARAX_database_manager.py --mnt --skip-if-exists --remove_unused
 
     - name: Stop any running containers
       continue-on-error: true

diff --git a/code/ARAX/ARAXQuery/ARAX_database_manager.py b/code/ARAX/ARAXQuery/ARAX_database_manager.py
@@ -10,6 +10,8 @@
 pathlist = os.path.realpath(__file__).split(os.path.sep)
 RTXindex = pathlist.index("RTX")
 sys.path.append(os.path.sep.join([*pathlist[:(RTXindex + 1)], 'code']))
+print(os.path.sep.join([*pathlist[:(RTXindex + 1)], 'code']))
+print(sys.path)
 from RTXConfiguration import RTXConfiguration
 
 knowledge_sources_filepath = os.path.sep.join([*pathlist[:(RTXindex + 1)], 'code', 'ARAX', 'KnowledgeSources'])
@@ -458,4 +460,4 @@ def main():
 
 
 if __name__ == "__main__":
-    main()
+    main()